Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_023738.1 Length=106327 Score E Sequences producing significant alignments: (Bits) Value seq9379 217 1e-51 >seq9379 Length=20973 Score = 217 bits (240), Expect = 1e-51 Identities = 257/346 (74%), Gaps = 3/346 (1%) Strand=Plus/Minus Query 94425 GATCTCCCCATCGGAGACGAACGCGCCCTGTATCCGGATGGCGCTGCGCGCCCCCACCGG 94484 ||||||| | |||| || ||| |||||||| | ||| | | ||| |||||||| ||| Sbjct 8294 GATCTCCTCGTCGGTGATGAAGGCGCCCTGCAGGCGGGTCGGCTTGCCCGCCCCCATCGG 8235 Query 94485 CAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCAC 94544 |||||| | | |||| ||||| || ||||||| |||||| || || || ||||| || Sbjct 8234 CAGGAACAGCGCGTCGCCCATACCGATGAGCTTCTCGGCCCCCTGCTGATCGAGGATGAC 8175 Query 94545 CCGGCTATCGGTGAGGGACGCTGTGGCGAACGACAGCCGCGAGGGCACGTTGCTCTTGAT 94604 ||| || ||||| |||| |||||||| | ||| ||||| ||||||||| ||||||| Sbjct 8174 CCGCGAGTCCGTGAGCGACGACGTGGCGAAGGCCAGACGCGACGGCACGTTGGTCTTGAT 8115 Query 94605 GAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATGCCGGC 94664 || || || || || ||||| ||||| ||||||||||| || || || || || || || Sbjct 8114 CAGACCGGTGACGACGTCCACCGAGGGACGCTGCGTCGCGAGCACCAGGTGGATACCCGC 8055 Query 94665 CGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTAGCCACC 94724 |||||||||||||||| |||||| || || |||| || || || | | | Sbjct 8054 GGCACGCGCCTTCTGCGTGATGCGCACGATCGCTTCCTCGACGTC--TCGAGGCG-CGGT 7998 Query 94725 CATCATGAGGTCCGCGAGTTCATCCACCACTACCACGATGTAGGGG 94770 ||||||||||||||| || || || || | ||| |||||| ||| Sbjct 7997 CATCATGAGGTCCGCCAGCTCGTCGACGATCGCCAGGATGTACGGG 7952 Score = 168 bits (186), Expect = 5e-37 Identities = 399/595 (67%), Gaps = 26/595 (4%) Strand=Plus/Minus Query 94805 CCTGCATCTGCCGGTATCGGTCGTCCATCTCTACGGTGAGCCACCGCAGCGTTTTCACCG 94864 ||||||| | | |||| || | |||||||| || |||||| |||| | ||| Sbjct 7857 CCTGCATGTCCTGGTAGCGCTGCTCCATCTCCTCGACCAGCCACGCGAGCGCGGCCGCCG 7798 Query 94865 CCTCGTCAGCCTCTGTAACCA-CGGGCTGGAGAAGGTGGGGGATACCGTTGTACGGGGTG 94923 ||| | | || || | | |||| || || |||| ||||| || | ||| || || Sbjct 7797 CCTTCTTCGGCTGCGTGATGATCGGGGTGATGA-GGTGCGGGATGCCCTCGTAGGGCGTC 7739 Query 94924 AGCTCGACACAT-TTGGGGTCGATCATGATGAGTTTGACCCGATCAGGGGTCGCCCGGTA 94982 |||||||| ||| || |||||||| | ||| | || || || |||||||| Sbjct 7738 AGCTCGAC-CATCTTCGGGTCGATGAGGATCATCCGTACTTCCTCGGGCGTCGCCCGAGC 7680 Query 94983 GAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCCAGC 95042 ||||||||| |||||||| ||||||| |||| ||||||||||| || |||| || || Sbjct 7679 GAGCAGCGACACCAGCATCGAGTTGACGAAGGACGACTTGCCCGAGCCCGTCGACCCGGC 7620 Query 95043 CACCAGCAGATGCGGCATCTTGGCCAGGTTCAGGGAGACGTCCTTACCCTCGACGTCCTT 95102 ||||| ||| || ||||||||||||||||| | |||| | ||||||| |||||| Sbjct 7619 CACCAACAGGTGGGGCATCTTGGCCAGGTTGGCGCTGACGAAGTCGCCCTCGATGTCCTT 7560 Query 95103 GCCCACTGCCACGGT---CAACGGATGGTCATCCT---------CGGGAACGATGTGC-- 95148 |||| ||| || | || ||| |||| ||||| ||| || || || Sbjct 7559 CCCCA--GCC-CGATCACCAGCGGGTGGTGATCCTTCCGGGTGCTGGGCGCGGTGAGCAC 7503 Query 95149 ----TGCAACCGCACAGTCTGCCGTTCCGGCCGGGGGAGCTCGATTCCTACGGCTGTTTT 95204 || ||||| ||| || || | || | |||||| || ||||| | || Sbjct 7502 GTCGGACAGGCGCACCATCTCGCGGTCGGAGTTCGGCACCTCGATGCCCACGGCGGACTT 7443 Query 95205 CCCGGGGATGGGGGCAACCACCCGCACGCTCTCCGTTGCGAGCGCGTAGGCCAACTGGGA 95264 ||||||||||| || | || |||||| | ||||| || | ||||||||| | | | Sbjct 7442 GCCGGGGATGGGCGCCAGCAGACGCACGTTGTCCGTGGCCACCGCGTAGGCGATGTTGCG 7383 Query 95265 CTGCAGTTGTGCGACTTTCTGGATGCGCACACCCGGCCCCAGTGTGATCTCGTAGCGTGT 95324 | || | || |||| | ||| ||||| ||||| | ||||||||| || Sbjct 7382 CGCGAGGGCGGTGATCTTCTCCACCTTCACGCCCGGACCCAGCTCCACCTCGTAGCGGGT 7323 Query 95325 GACGCTCGGTCCATCGGTGCGGCCGGTGACCTTGGCCTCGATGTCGAACT-CTCG 95378 ||| |||| || |||| ||||||||| ||| ||||| | ||||| |||| Sbjct 7322 CACGGTCGGCCCGCGGGTGAATCCGGTGACCGCGGCGTCGATCTTGAACTGCTCG 7268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 339867207112160