Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq154 183 6e-41 seq1481 145 1e-29 seq1475 122 2e-22 seq2082 111 3e-19 seq63 93.3 8e-14 seq204 86.0 1e-11 >seq154 Length=1683969 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | ||||| || ||||| || || || |||||||| || || || |||| Sbjct 580025 TACCTCCTCGTAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 579966 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| ||||| || ||||| ||||| |||| || || ||||||| Sbjct 579965 ACAGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAG 579906 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | |||||||||||||||||||| || || || ||||| ||||| |||||| || || | Sbjct 579905 GAATTCCTTCCTTATCTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAA 579846 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || || || || ||||| ||||| || || |||||||| Sbjct 579845 CTTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 Score = 183 bits (202), Expect = 6e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| || ||||| || ||||| || || || || ||||| || || || |||| Sbjct 580253 TACCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAG 580194 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || |||||||| ||||| |||| || |||||||| | Sbjct 580193 AGAGGGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGGGG 580134 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||||||||||||||| || || ||||| ||||| ||||| || || | Sbjct 580133 GAATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAA 580074 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||||| || || || || ||||| ||||| || || |||||||| Sbjct 580073 CTTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCAT 580025 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | ||||| || ||||| || || || |||||||| || || || |||| Sbjct 579060 TACCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAG 579001 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || ||||| || || |||||||| ||||| |||| || || ||||||| Sbjct 579000 ACAGAGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCTGGAG 578941 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||||||||| ||||| || || ||||| ||||| |||||| || || | Sbjct 578940 GAATTCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCAGATGGCTCAA 578881 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || ||||| | || || || || |||||||| Sbjct 578880 CTTCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 578832 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | ||||| || ||||| || || || || ||||| || || || || | Sbjct 578604 TACCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGG 578545 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| ||||| || ||||| ||||| |||| || || ||||||| Sbjct 578544 AGAGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAG 578485 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||||||||||||||| || || ||||| ||||| ||||| || || | Sbjct 578484 GAATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAA 578425 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||||| || || || || ||||| ||||| || || |||||||| Sbjct 578424 CTTCTAAAGTGATAGTTTTACCAGTCAATGTCTTCACGAAGATCTGCAT 578376 Score = 165 bits (182), Expect = 2e-35 Identities = 174/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| || ||||| || ||||| || || || || ||||| || || || |||| Sbjct 579797 TACCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAG 579738 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || ||||| ||||| ||||| |||| || || ||||||| Sbjct 579737 AGAGGGTACGGCCATCTTCCAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAG 579678 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||||||||||||||| ||||| || || ||||| ||||| ||||| || || | Sbjct 579677 GAATTCCTTCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCGGATGGCTCAA 579618 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||| || || || || ||||| | || || || || |||||||| Sbjct 579617 CTTCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 579569 Score = 163 bits (180), Expect = 6e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || ||||| || || |||||||| ||||| || || || || || || ||| || Sbjct 580467 CGAAGGACTAAATGAAGTGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGGCCA 580408 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || |||||||| ||||| |||| || || |||||||| |||||||||||| Sbjct 580407 TCCTCAAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTA 580348 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||||| || || || ||||||||||| |||||| || || || ||||| || || Sbjct 580347 TCTTGAACTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCAACCTCCAAGGTAATT 580288 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| ||||| | ||||| || || |||||||| Sbjct 580287 GTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 580253 Score = 91.5 bits (100), Expect = 3e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| | ||||| || ||||| || || || || ||||| || || || || | Sbjct 578376 TACCTCCTCGTAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGG 578317 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || ||||| || || |||||||| ||||| |||| || || ||||||| Sbjct 578316 AGAGGGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAG 578257 Query 82702 GTATTCCTTCCTT 82714 | ||||||||||| Sbjct 578256 GAATTCCTTCCTT 578244 >seq1481 Length=432034 Score = 145 bits (160), Expect = 1e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 |||| || ||||| || || || | ||| || ||||||| || || || ||||||| Sbjct 233765 CTTTTTGAATATTGTAGTCCGACAACGTTCGGCCATCTTCTAACTGCTTCCCGGCAAAGA 233824 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | || | || ||||| ||||| || |||||||| ||||||||||| || || ||||| | Sbjct 233825 TCAGGCGCTGCTGATCAGGAGGAATCCCTTCCTTGTCTTGAATCTTCGCCTTAACATTCT 233884 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 | ||||| ||| || ||||| ||||| || ||||| || ||||| | ||||||||||| Sbjct 233885 CGATCGTGTCAGAGGGCTCTACCTCCAACGTAATCGTTTTTCCTGTGAGCGTCTTTACAA 233944 Query 82801 ATATCTGCAT 82810 | |||||||| Sbjct 233945 AAATCTGCAT 233954 >seq1475 Length=480095 Score = 122 bits (134), Expect = 2e-22 Identities = 141/190 (74%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 82621 CTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGA 82680 ||||||||||||| || ||||| ||| | | || ||||||| ||||| || ||||| | Sbjct 62653 CTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAAA 62712 Query 82681 TTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTT 82740 | |||| || || ||||| || ||||| |||||||| || |||||||| || ||||||| Sbjct 62713 TCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGTATCTTTGCCTTGACATTTT 62772 Query 82741 CAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAA 82800 |||| || || || || || || | || || || || || || | || || |||| Sbjct 62773 CAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACAA 62832 Query 82801 ATATCTGCAT 82810 | || ||||| Sbjct 62833 AAATTTGCAT 62842 >seq2082 Length=177026 Score = 111 bits (122), Expect = 3e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 50776 TTAAATAATAGAACACTTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCTACG 50835 ||||||| || ||||| ||| || ||| ||||||| ||||| |||||| || || || Sbjct 158305 TTAAATAGTACAACACCTACATTCCCTGTATAGTCCCTGTCAACTACACCTGCTCCAACA 158246 Query 50836 TCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGTATCCATTA 50895 || || |||| || ||| | | |||||||| ||||||||||| || | | | Sbjct 158245 TCAATGAAATGATGTAGAGCCAAAGCGGATCTAGGTGCTATTCTACCATAACAGTTTTCA 158186 Query 50896 GGTATTTTTATAATTATATCTGTTTTTATTAATTCCTTATCCATAGGT-TCTATTACATA 50954 |||| ||| || ||||||||| || ||||||| | ||| | | | || |||||| Sbjct 158185 GGTAGTTTAATTGCTATATCTGTCTTAATTAATT-GTCTGCCAAATTTCTGTACTACATA 158127 Query 50955 ATCATACGCGCTATATAAGTCATAACCAGC 50984 |||||| || ||| |||| ||| ||||||| Sbjct 158126 ATCATAGGCACTAAATAAATCAAAACCAGC 158097 >seq63 Length=2369799 Score = 93.3 bits (102), Expect = 8e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 198325 AAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGAGAAGGAAAAATGC 198384 ||||||| ||| ||| ||||| | | || |||||| || | | ||||| ||||||| Sbjct 1387648 AAACACACGACGATCTGTGGAACTCGGCTCAGATACAGCTGGTCCGGGAAGGTAAAATGC 1387589 Query 198385 ATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACACCGGAAG 198444 || | || || ||||||||||||| || |||||||| || |||||| | || |||| Sbjct 1387588 ATGGATTCTTGCGAATGTACTGGGCCAAGAAGATACTGGAGTGGACAGCTTCGCCTGAAG 1387529 Query 198445 ACGCTTTGAGTTATAG-TATCTATCTAAACAATAAGTACGAACTAGACGGCACGGATCCT 198503 | ||||| || | || ||| || || || | | || | ||||||| |||||| Sbjct 1387528 AGGCTTT-AGCTTCAGCTATTTACCTCAATGACAGATATAGCATGGACGGCAGAGATCCT 1387470 Query 198504 AACGGATACGTAGGT 198518 | ||| ||||| ||| Sbjct 1387469 AGCGGTTACGTTGGT 1387455 >seq204 Length=3085492 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 82707 CCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCC 82766 || || ||||| || || || ||||| ||||||||||| |||||| ||||| || || Sbjct 1215760 CCCTCTTTATCCTGGATTTTAGCTTTCACATTTTCAATAGTATCAGACGGTTCAACCTCT 1215701 Query 82767 AAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | || || ||||| |||||||| || || ||||| ||||||||| Sbjct 1215700 AGGGTGATTGTCTTCCCTGTCAAAGTTTTGACAAAGATCTGCATT 1215656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981055186204430