Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq2082 114 2e-20 seq63 89.7 9e-13 >seq2082 Length=177026 Score = 114 bits (126), Expect = 2e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 49065 TTAAATAATAGAACACCTACGTTACCTCTATAGTCTGAGTCAATTACACCAGCACCTACG 49124 ||||||| || ||||||||| || ||| ||||||| ||||| |||||| || || || Sbjct 158305 TTAAATAGTACAACACCTACATTCCCTGTATAGTCCCTGTCAACTACACCTGCTCCAACA 158246 Query 49125 TCTATAAAATAATTATAAGCAAGCCCTGATCTAGGAGCTATTCTACCGTAGTATCCATTA 49184 || || |||| || ||| | | |||||||| ||||||||||| || | | | Sbjct 158245 TCAATGAAATGATGTAGAGCCAAAGCGGATCTAGGTGCTATTCTACCATAACAGTTTTCA 158186 Query 49185 GGTATTTTTATAATTATATCTGTTTTTATTAATTCCTTATCCATAGGT-TCTATTACATA 49243 |||| ||| || ||||||||| || ||||||| | ||| | | | || |||||| Sbjct 158185 GGTAGTTTAATTGCTATATCTGTCTTAATTAATT-GTCTGCCAAATTTCTGTACTACATA 158127 Query 49244 ATCATACGCGCTATATAAGTCATAACCAGC 49273 |||||| || ||| |||| ||| ||||||| Sbjct 158126 ATCATAGGCACTAAATAAATCAAAACCAGC 158097 >seq63 Length=2369799 Score = 89.7 bits (98), Expect = 9e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 183008 AAACACATGACCCTCTATGGAATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGC 183067 ||||||| ||| ||| ||||| | | || |||||| || | | ||||| ||||||| Sbjct 1387648 AAACACACGACGATCTGTGGAACTCGGCTCAGATACAGCTGGTCCGGGAAGGTAAAATGC 1387589 Query 183068 ATAGTTTTTTACGAATGTACTGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAG 183127 || | || || |||||||||||||| || |||||||| || |||||| | || |||| Sbjct 1387588 ATGGATTCTTGCGAATGTACTGGGCCAAGAAGATACTGGAGTGGACAGCTTCGCCTGAAG 1387529 Query 183128 ATGCTTT 183134 | ||||| Sbjct 1387528 AGGCTTT 1387522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 902718170683200