Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq154 123 2e-23 seq907 120 3e-22 seq1475 93.3 4e-14 seq1481 91.5 1e-13 >seq154 Length=1683969 Score = 123 bits (136), Expect = 2e-23 Identities = 153/207 (74%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| || ||||| || || || | | | || || || Sbjct 579037 AAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCA-TCTTCCAG 578979 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| ||||||||||| ||||| || |||||||| || ||| Sbjct 578978 CTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGAT 578919 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| || || | ||||| || || | ||||| |||||| || Sbjct 578918 CTTGGCCTTAACATTCTCAATAGTATCAGATGGCTCAACTTCCAAGGTGATGGTTTTTCC 578859 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| ||||| |||||||| Sbjct 578858 TGTAAGGGTTTTCACGAAGATCTGCAT 578832 Score = 118 bits (130), Expect = 1e-21 Identities = 154/208 (74%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||||||||||||||| || ||||| || || || | | | || || || Sbjct 580002 AAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA-TCTTCCAG 579944 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | ||||| ||||||||||| ||||| || |||||||| || ||| Sbjct 579943 TTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCT-TGAA 579885 Query 133574 CTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| || |||| | ||||| || || | ||||| || || | |||| |||||| | Sbjct 579884 TTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAACTTCCAAAGTGATGGTTTTAC 579825 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||||| || || |||||||||||||| Sbjct 579824 CGGTCAATGTCTTCACGAAAATCTGCAT 579797 Score = 109 bits (120), Expect = 5e-19 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| || | || | | | || || || Sbjct 579774 AAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCA-TCTTCCAG 579716 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | ||||| ||||||||||| ||||| || |||||||| || ||| Sbjct 579715 CTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGAT 579656 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||| | | ||||| || |||| ||||| || || | ||||| |||||| || Sbjct 579655 CTTGGCCTTAACATTCTCAATAGTATCGGATGGCTCAACTTCCAAGGTGATGGTTTTTCC 579596 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || ||||| ||||| |||||||| Sbjct 579595 TGTAAGGGTTTTCACGAAGATCTGCAT 579569 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| || ||||| ||| | || | | | || || || Sbjct 578581 AAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCA-TCTTCCAG 578523 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||||| || ||| | ||||| ||||||||||| ||||| || |||||||| || || Sbjct 578522 TTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGAAT 578463 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 ||| ||||| | ||||| || |||| ||||| || || | |||| ||||| || Sbjct 578462 CTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCTAAAGTGATAGTTTTACC 578403 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || ||||| |||||||| Sbjct 578402 AGTCAATGTCTTCACGAAGATCTGCAT 578376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| |||||||| || ||| | || || ||||||||||| ||||| || |||||||| Sbjct 580407 TCCTCAAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTA 580348 Query 133566 TCGGTGATCTTTTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| |||| || |||| | |||| || || | ||||| || || | ||| | Sbjct 580347 TCT-TGAACTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCAACCTCCAAGGTAAT 580289 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || || || |||||||||||||| Sbjct 580288 TGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 580253 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 || || | ||| ||||| ||||| |||||||| ||| | || | | | || || || Sbjct 578809 AAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCA-TCTTCCAG 578751 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 |||||| || ||| | ||||| ||||||||||| || || || ||||| || || ||| Sbjct 578750 CTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCTTCTTTATCTTGGAT 578691 Query 133574 CTTTTGCTTGAGC-TGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||| |||| | | ||| | || || | ||||| || || | |||| ||| || | Sbjct 578690 -TTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCTCAACTTCCAATGTGATGGTCTTTC 578632 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || |||||||||||||| Sbjct 578631 CTGTTAGGGTCTTCACGAAAATCTGCAT 578604 >seq907 Length=523837 Score = 120 bits (132), Expect = 3e-22 Identities = 158/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 148266 ACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGTTCAAAC 148325 ||||| |||||||| | |||||| || || ||| | ||| || || | || || || Sbjct 405415 ACCTGGAACTCGCCTGAGAGCACTCGTCGTGAATAGATGTTACTAGTGTAAGGCTCGAAG 405356 Query 148326 GACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACCAGCAGC 148385 |||||||| ||||| | |||||| ||||| | ||| ||||||||| || | | || | Sbjct 405355 GACTCGTTATTGCCAAGAATCTGTGCGGTAGATGCAGTGGGCATGGGAGCCAGTAACAAC 405296 Query 148386 GAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCCAGAG--CG 148443 ||||| || | ||| | ||| || || ||| ||||| ||||||||||| || || Sbjct 405295 GAGTTTCGTACACCATGCTTTGCGATCTTAGCCTTGAGAGCAGCCCAGTCCCACAGGTCG 405236 Query 148444 GCGACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480 | | |||||||| ||||||||| |||||||| || Sbjct 405235 GTG--GGTGTCACTCCCCACATGTCATACTGCAGGAT 405201 Score = 96.9 bits (106), Expect = 3e-15 Identities = 97/126 (77%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 ||||||| || ||||| | ||| || |||||||| ||||| || | ||||| |||| Sbjct 396406 TGTACTCGACAATCTCTGTGCAGAGGTTGCTGCACTTGATGGTCCCAAGGTTCTGCTGAT 396347 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCG 148983 ||||||||| |||||| || ||||| || | ||||||||| | ||||| || ||||| | Sbjct 396346 TGCTCTTGCGGTTGCAGGCATCCTTATATAACATGTACGGAACACCAGTCTCTACCTGGG 396287 Query 148984 TTTCCA 148989 |||| Sbjct 396286 CGTCCA 396281 >seq1475 Length=480095 Score = 93.3 bits (102), Expect = 4e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCGCGTAAA 133530 |||||||||||||||| || | || | || || | ||| || || || ||| Sbjct 62653 CTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAAA 62712 Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 | || ||||||||||| || ||||| || ||||| || |||||| ||||| | | Sbjct 62713 TCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGTATCTTTGCCTTGACATTTT 62772 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGA 133650 ||| ||||| | ||||| || || | ||| | |||||| || || || ||||| || | Sbjct 62773 CAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACAA 62832 Query 133651 AAATCTGCATG 133661 |||| |||||| Sbjct 62833 AAATTTGCATG 62843 >seq1481 Length=432034 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 |||| || |||||||| || || ||| | | | || || | |||||| || || | Sbjct 233765 CTTTTTGAATATTGTAGTCCGACAACGTTCGGCCA-TCTTCTAACTGCTTCCCGGCAAAG 233823 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 || || |||||||| || ||||| || ||||||||||| ||||| ||| | | | Sbjct 233824 ATCAGGCGCTGCTGATCAGGAGGAATCCCTTCCTTGTCTTGAATCTTCGCCTTAACATTC 233883 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | |||||| | |||||| || || | || | ||||| || || || || ||||| Sbjct 233884 TCGATCGTGTCAGAGGGCTCTACCTCCAACGTAATCGTTTTTCCTGTGAGCGTCTTTACA 233943 Query 133650 AAAATCTGCATG 133661 |||||||||||| Sbjct 233944 AAAATCTGCATG 233955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483049955818800