Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1481 118 7e-22 seq154 87.8 1e-12 seq1475 82.4 5e-11 >seq1481 Length=432034 Score = 118 bits (130), Expect = 7e-22 Identities = 107/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | ||| | || || ||| ||| ||||| ||||||||||| || Sbjct 222095 ACCACCTCTCAGACGCAGCACAAGGTGAAGTGTGGACTCCTTTTGAATGTTGTAATCAGA 222154 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 |||||||| | || ||||| |||||||| ||||||||||| | |||||| ||| | || Sbjct 222155 AAGTGTGCGACCATCTTCCAACTGTTTTCCTGCAAAAATCAATCTCTGCTGGTCTGGGGG 222214 Query 33642 CACACCTTCTTTGTC 33656 | ||||||||||| Sbjct 222215 GATTCCTTCTTTGTC 222229 Score = 89.7 bits (98), Expect = 3e-13 Identities = 136/191 (71%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 ||||||| || ||||| || || | || || | || || || || || |||||||| | Sbjct 233765 CTTTTTGAATATTGTAGTCCGACAACGTTCGGCCATCTTCTAACTGCTTCCCGGCAAAGA 233824 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 ||| ||||||||||| | || | ||||| ||||| ||| ||| | | ||||| Sbjct 233825 TCAGGCGCTGCTGATCAGGAGGAATCCCTTCCTTGTCTTGAATCTTC-GCCTTAACATTC 233883 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||||| | || || || | ||| |||||||| ||||| | ||| |||||| Sbjct 233884 TCGATCGTGTCAGAGGGCTCTACCTCCAACGTAATCGTTTTTCCTGTGAGCGTCTTTACA 233943 Query 33739 AAGATCTGCAT 33749 || |||||||| Sbjct 233944 AAAATCTGCAT 233954 >seq154 Length=1683969 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||| |||| || || | ||||| || || || ||| || || |||||||| || || Sbjct 580252 ACCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGA 580193 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || | || |||| || ||||| || || || | |||||||||||| | || Sbjct 580192 GAGGGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGGGGG 580133 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||| || | | |||| || | ||| ||| || || | Sbjct 580132 AATTCCTTCCTTATCTTGAATCTT-AGCCTTGACATTCTCAATGGTATCGGATGGCTCAA 580074 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| |||||||| || || || || || |||||||||||| Sbjct 580073 CTTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCATA 580024 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || ||| || || |||||||| |||||||| || || | || ||| Sbjct 578584 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCC 578525 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| || || || || || | |||||||| ||| | || | ||||| || || | Sbjct 578524 AGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGA 578465 Query 33661 ATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || || | ||| ||| ||| ||| || || || || | ||||| ||||| Sbjct 578464 ATCTTAGCCTTGA-CATTCTCAATGGTATCGGATGGCTCAACTTCTAAAGTGATAGTTTT 578406 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 ||| || || || || || |||||||||||| Sbjct 578405 ACCAGTCAATGTCTTCACGAAGATCTGCATA 578375 >seq1475 Length=480095 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/196 (70%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| ||||| ||||| || ||||| || || | || || || ||||| |||||||||| Sbjct 62653 CTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAAA 62712 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAG 33679 ||| |||||||| ||| | || | || || || || || || || | |||| Sbjct 62713 TCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGTATCTT-TGCCTTGACATTT 62771 Query 33680 TC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 || | ||||| || || || |||| || || |||||||| || | ||||| ||| Sbjct 62772 TCAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACA 62831 Query 33739 AAGATCTGCATAGTTG 33754 || || ||||| |||| Sbjct 62832 AAAATTTGCAT-GTTG 62846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328458146870400