Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq154 140 8e-28 seq1481 107 5e-18 >seq154 Length=1683969 Score = 140 bits (154), Expect = 8e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||||||||| ||||| |||||||| || ||||| || | || Sbjct 578847 AAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGAGCCATCTGATACTATTGAGAAT 578906 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||||||| || ||| || |||| |||||| Sbjct 578907 GTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAGCAGCGACTCATCTTC 578966 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || ||||||||| |||||||||| | ||| || | || |||||| ||||||||||||| Sbjct 578967 GCTGGAAAGCAGCTGGAAGATGGCCGTACTCTGTCTGACTACAACATCCAGAAAGAGTCC 579026 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||| | || || |||||||| Sbjct 579027 ACCCTCCACTTGGTCCTGCGACTTCGA 579053 Score = 125 bits (138), Expect = 2e-23 Identities = 154/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || |||||||| || ||||| |||||||| || |||||| || |||| Sbjct 578619 AAGACCCTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCTGATACCATCGAGAAC 578678 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| || ||||| |||||||||||| || ||| || |||| ||||| Sbjct 578679 GTAAAAGCCAAA-ATCCAAGATAAAGAAGGAATTCCCCCAGACCAGCAGCGACTCATCTT 578737 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||||||||| | || | |||| ||||| ||||||| ||||| Sbjct 578738 CGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAATATCCAGAAGGAGTC 578797 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||| | || || |||||||| Sbjct 578798 AACCCTCCACTTGGTCCTGCGACTTCGA 578825 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| |||||||||||||| || ||||| || | || || ||| Sbjct 579821 ACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCTGATACCATTGAGAATGTCAAGGCC 579880 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || |||||||| || ||||||||| || ||| || |||| |||||||| || ||| Sbjct 579881 AAAATTCAAGATAAGGAAGGAATTCCTCCAGACCAGCAGCGACTCATCTTCGCTGGTAAG 579940 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||||||||| | || || | || |||||| ||||||||||||| || || ||| Sbjct 579941 CAACTGGAAGATGGCCGTACCCTGTCTGACTACAACATCCAGAAAGAGTCCACCCTCCAC 580000 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || || |||| ||| Sbjct 580001 TTGGTCCTGCGACTACGA 580018 Score = 109 bits (120), Expect = 1e-18 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| |||||||||||||| || || || || | || || ||| Sbjct 580049 ACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCCGATACCATTGAGAATGTCAAGGCT 580108 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||||||| || || || ||||||||||||| |||||| Sbjct 580109 AAGATTCAAGATAAGGAAGGAATTCCCCCAGATCAGCAGCGACTTATCTTCGCTGGAAAG 580168 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| |||||||||| | || | | || |||||| ||||||| ||||| || || ||| Sbjct 580169 CAGCTGGAAGATGGCCGTACCCTCTCTGACTACAACATCCAGAAGGAGTCAACCCTCCAC 580228 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || || |||| ||| Sbjct 580229 TTGGTCCTGCGACTGCGA 580246 Score = 107 bits (118), Expect = 5e-18 Identities = 148/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||||||||| ||||| |||||||| || || || || | || Sbjct 579584 AAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGAGCCATCCGATACTATTGAGAAT 579643 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||| || ||||||||| || ||| || |||| |||||| Sbjct 579644 GTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAGCAGCGACTCATCTTC 579703 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || || ||| |||||||||| | || | | || |||||| ||||||| ||||| Sbjct 579704 GCTGGTAAACAGCTGGAAGATGGCCGTACCCTCTCTGACTACAACATCCAGAAGGAGTCG 579763 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCGA 206391 || || ||| | || || |||| ||| Sbjct 579764 ACCCTCCACTTGGTCCTGCGACTGCGA 579790 Score = 105 bits (116), Expect = 2e-17 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 || || ||||| |||||||| ||||| || || || || | || || ||| Sbjct 578400 ACTGGTAAAACTATCACTTTAGAAGTTGAGCCATCCGATACCATTGAGAATGTCAAGGCT 578459 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 ||||||||||| || ||||||||| || ||| || |||| |||||||| || ||| Sbjct 578460 AAGATTCAAGATAAGGAAGGAATTCCTCCAGACCAGCAGCGACTCATCTTCGCTGGTAAG 578519 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 || |||||||||| | || | |||| |||||| ||||||| ||||| || || ||| Sbjct 578520 CAACTGGAAGATGGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCAACCCTCCAC 578579 Query 206374 CTTGTTTTGAGACTTCGA 206391 | || || |||||||| Sbjct 578580 TTGGTCCTGCGACTTCGA 578597 Score = 100 bits (110), Expect = 7e-16 Identities = 137/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || |||||||| || || || ||||| || || ||||| || | ||| Sbjct 580268 AAGACCCTAACAGGAAAGACAATTACCTTGGAGGTTGAGCCATCTGATACCATTGAAAAT 580327 Query 206245 GTAAAG-CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||| | |||| ||||||| || ||||||||| || ||| || |||||||||| Sbjct 580328 GTCAAGGCTAAAG-TTCAAGATAAGGAAGGAATTCCTCCAGACCAGCAGCGACTTATCTT 580386 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| ||||||||| | || ||||| | || | | || |||||| ||||||| || || Sbjct 580387 CGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTTTCGGACTACAACATCCAGAAGGAATC 580446 Query 206364 TACTCTTCA 206372 ||| ||||| Sbjct 580447 TACACTTCA 580455 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 |||||||| || || | ||| || || ||||||||||||| || ||||||| || ||| Sbjct 579053 TCGAAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGT 578994 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 | |||||||||||||||||||| |||||||| || || || || Sbjct 578993 ACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTG 578949 Score = 87.8 bits (96), Expect = 4e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 206266 AAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGAT 206325 || ||||||||| || ||| || ||||||||||||| ||||||||| |||||||| Sbjct 578244 AAGGAAGGAATTCCTCCAGACCAGCAGCGACTTATCTTCGCTGGAAAGCAGCTGGAAGAT 578303 Query 206326 GGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGA 206385 || | || | |||| |||||| ||||||| ||||| || || ||| | || || || Sbjct 578304 GGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCGA 578363 Query 206386 CTTCGA 206391 || ||| Sbjct 578364 CTACGA 578369 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 204751 TCGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGT 204810 ||| |||| || || | ||| || || ||||| ||||||| || ||||||| | || Sbjct 580246 TCGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGT 580187 Query 204811 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||||||||||| ||||||||||| || || ||| Sbjct 580186 ACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGA 580141 >seq1481 Length=432034 Score = 107 bits (118), Expect = 5e-18 Identities = 138/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGA 206231 ||||| ||||| ||| |||||||||||||||||||| || ||||| || || ||||| Sbjct 233951 CAGAT-TTTTGTAAAGACGCTCACAGGAAAAACGATTACGTTGGAGGTAGAGCCCTCTGA 233893 Query 206232 CACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 ||| |||| || ||| ||||||||||| || ||||| ||| || || || Sbjct 233892 CACGATCGAGAATGTTAAGGCGAAGATTCAAGACAAGGAAGGGATTCCTCCTGATCAGCA 233833 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 | || ||||| ||||| |||||||| |||||||| | || ||| | || ||||| | Sbjct 233832 GCGCCTGATCTTTGCCGGGAAGCAGTTAGAAGATGGCCGAACGTTGTCGGACTACAATAT 233773 Query 206352 CCAGAAAG 206359 || |||| Sbjct 233772 TCAAAAAG 233765 Score = 89.7 bits (98), Expect = 1e-12 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 206227 TCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGAC 206286 ||||| ||| | ||| || ||| ||||| ||||| ||||||||||| || ||| Sbjct 222265 TCTGATACAATTGAAAACGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCCCCAGAC 222206 Query 206287 GCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTAC 206346 || ||| | || || || ||||| |||||||||||||| | || | | |||||| Sbjct 222205 CAGCAGAGATTGATTTTTGCAGGAAAACAGTTGGAAGATGGTCGCACACTTTCTGATTAC 222146 Query 206347 AACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 ||| | || || ||||| || ||||||||||| Sbjct 222145 AACATTCAAAAGGAGTCCACACTTCACCTTGT 222114 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180891530611770