Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq154 113 4e-20 seq907 96.9 3e-15 seq1481 87.8 2e-12 seq1475 84.2 2e-11 >seq154 Length=1683969 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | ||||||| || || |||||||||||| | |||||| | Sbjct 578590 CGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCA 578531 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || ||||| | |||| || ||||| || |||||||| || ||||| ||| Sbjct 578530 TCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTA 578471 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || || | | || | ||||||| ||||| ||||| | || | Sbjct 578470 TCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCTAAAGTGATA 578411 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||| || || | ||| |||||||| Sbjct 578410 GTTTTACCAGTCAATGTCTTCACGAAGATCTGCAT 578376 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | | |||||||| || ||||||||||| || |||||| | Sbjct 580011 CGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCA 579952 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| || || ||||| | |||| || ||||| || |||||||| || ||||| ||| Sbjct 579951 TCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTA 579892 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | || | ||||| | ||||| ||||| | || | Sbjct 579891 TCTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAACTTCCAAAGTGATG 579832 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| |||| || || | |||||||||||| Sbjct 579831 GTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 Score = 111 bits (122), Expect = 1e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| ||||| || | | | ||||| || || ||||||||||| | |||| Sbjct 579789 CGCAGTCGCAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTA 579730 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| ||||||||||| | |||| || ||||| || |||||||| || ||| Sbjct 579729 CGGCCATCTTCCAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCT 579670 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || ||||| || || || | | || | |||||||| ||||| ||||| | Sbjct 579669 TCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCGGATGGCTCAACTTCCAAG 579610 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||| || || || ||||| | ||| |||||||| Sbjct 579609 GTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 579569 Score = 105 bits (116), Expect = 6e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| |||| ||||| || | | ||||||| || || ||||||||||| | |||| Sbjct 580245 CGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTA 580186 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| ||||| || || | |||| || ||||| |||||||| || || ||| Sbjct 580185 CGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGGGGGAATTCCT 580126 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || ||||| ||| || || | | || | ||||||| ||||| ||||| | Sbjct 580125 TCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAAA 580066 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | |||||||| |||| || || | ||| |||||||| Sbjct 580065 GTGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCAT 580025 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | ||||||| || || || ||||||||| | |||||| | Sbjct 578818 CGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCA 578759 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| ||||| | |||| || ||||| || ||||| || || ||||||||| Sbjct 578758 TCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCTTCTTTA 578699 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||| | | || | ||||| | ||||| ||||| | || | Sbjct 578698 TCTTGGATTTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCTCAACTTCCAATGTGATG 578639 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || || || || || | |||||||||||| Sbjct 578638 GTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 578604 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| ||||| || | | | |||||||| || ||||||||||| || ||||| | Sbjct 579046 CGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGGCCA 578987 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||| || || | |||| || ||||| || |||||||| || ||||| ||| Sbjct 578986 TCTTCCAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTA 578927 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || || | | || | |||||| | ||||| ||||| | || | Sbjct 578926 TCTTGGATCTTGGCCTTAACATTCTCAATAGTATCAGATGGCTCAACTTCCAAGGTGATG 578867 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || ||||| | ||| |||||||| Sbjct 578866 GTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 578832 >seq907 Length=523837 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/215 (71%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 146899 ACTTGAAACTCGCCCGCCAGCACACGTC-TGAGATACACATTGCTAGTGAAAGGCTCAAA 146957 || || |||||||| | ||||| |||| ||| ||| | || |||||| ||||||| || Sbjct 405415 ACCTGGAACTCGCCTGAGAGCACTCGTCGTGA-ATAGATGTTACTAGTGTAAGGCTCGAA 405357 Query 146958 AGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCACCAACAA 147017 ||||| |||||||| | || || || || | ||| || |||||| |||| ||||| Sbjct 405356 GGACTCGTTATTGCCAAGAATCTGTGCGGTAGATGCAGTGGGCATGGGAGCCAGTAACAA 405297 Query 147018 TGAATTTCGCAGACCGTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCCACA--TC 147075 || ||||| | ||| | | ||| || |||| | || ||||||||||| || Sbjct 405296 CGAGTTTCGTACACCATGCTTTGCGATCTTAGCCTTGAGAGCAGCCCAGTCCCACAGGTC 405237 Query 147076 GACGAGGGCGTCACGTTCCACATGTCGTACTGGAG 147110 | | ||| ||||| ||||||||| ||||| || Sbjct 405236 G--GTGGGTGTCACTCCCCACATGTCATACTGCAG 405204 >seq1481 Length=432034 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||||||||| |||||||| || || || |||||| | ||| || |||| | ||| Sbjct 233765 CTTTTTGAATATTGTAGTCCGACAACGTTCGGCCATCTTCTAACTGCTTCCCGGCAAAGA 233824 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | || ||||| ||||| ||||| || ||||| || || ||| || || | | | Sbjct 233825 TCAGGCGCTGCTGATCAGGAGGAATCCCTTCCTTGTCTTGAATCTTCGCCTTAACATTCT 233884 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | || || | ||||| || || | ||| | |||||| || || || || |||| | Sbjct 233885 CGATCGTGTCAGAGGGCTCTACCTCCAACGTAATCGTTTTTCCTGTGAGCGTCTTTACAA 233944 Query 132114 AAATCTGCATG 132124 ||||||||||| Sbjct 233945 AAATCTGCATG 233955 >seq1475 Length=480095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||| || || |||||||| | |||||| |||||| | ||||||||||| | | | Sbjct 62653 CTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAAA 62712 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | || ||||| || ||||| || || || || ||||| || ||| || | | || Sbjct 62713 TCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGTATCTTTGCCTTGACATTTT 62772 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | ||| || | ||||| || || | || | |||||||| || || ||||| | | Sbjct 62773 CAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACAA 62832 Query 132114 AAATCTGCATG 132124 |||| |||||| Sbjct 62833 AAATTTGCATG 62843 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476245579633200