Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq268 114 2e-19 seq254 96.9 5e-14 >seq268 Length=1151025 Score = 114 bits (126), Expect = 2e-19 Identities = 156/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || |||||||| || || ||||| ||||| |||| || |||| |||| || Sbjct 979578 ATTTACAAGGTACTGAAACAGGTCCACCCTGACACCGGTGTT------TCCAGCAAGGCC 979631 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||| || || |||||||| || | ||||| | | |||| ||| | Sbjct 979632 ATGTCCATCATGAACAGCTTCGTGAACGACATATTCAAGCGCATAGCCGCCGAAGCCTCT 979691 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 |||||||| | || ||||||||| || ||| | || ||||||||||||||||| Sbjct 979692 CGCCTGGCACACTACAACAAGCGGTCGACTATCACGTCACGGGAGATCCAGACCGCCGTC 979751 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGT 725128 | || | ||| || ||| |||||| ||||||||| Sbjct 979752 AGGCTCCTGTTGCCCGACGAGTTGGCCAAGCACGCCGT 979789 >seq254 Length=3229631 Score = 96.9 bits (106), Expect = 5e-14 Identities = 156/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 1456095 CGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAA 1456154 ||||||||| || |||| | || | | || || || ||||| || |||||||| Sbjct 2115966 CGCCATCGAAACAATGCCCTGTGTCAAGCGCAAAGCTGATTGGGCATTGCAGTGGATCGC 2115907 Query 1456155 CAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GTCGAGGGCATC 1456213 || ||| || | || |||| ||||| | || | || || || |||||||| ||| Sbjct 2115906 CAGCGAGA-CCGCAACG-TTTGGTGAGCGTATTGTAGCGTTCGCTGCAGTCGAGGGTATC 2115849 Query 1456214 TTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGT 1456273 || ||||| || || ||| ||||||| |||||||||||||| |||||||||||||| Sbjct 2115848 TTCTTCTCCGGTAGCTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGA 2115789 Query 1456274 CTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGT 1456312 | | ||| ||||| ||| | ||| || ||||| || Sbjct 2115788 C-TAACCTTCAGCAATGAACTGATCTCACGTGACGAGGT 2115751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7171891950701940