Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq154 89.7 5e-13 seq1475 84.2 2e-11 >seq154 Length=1683969 Score = 89.7 bits (98), Expect = 5e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||| || | || ||||| |||||||| || || Sbjct 578567 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAA 578508 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||||| | ||||| || ||||| ||| | | | Sbjct 578507 GATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGAATCTTAGCCTTGACATT 578448 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| | || || || | ||||| |||||||| ||||| || ||||| Sbjct 578447 CTCAATGGTATCGGATGGCTCAACTTCTAAAGTGATAGTTTTACCAGTCAATGTCTTCAC 578388 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 578387 GAAGATCTGCAT 578376 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | ||| || | || |||||||| ||||| || || Sbjct 579760 CTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGGCCATCTTCCAGCTGTTTACCAGCGAA 579701 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | ||||| | ||||| || |||||| ||| | | | Sbjct 579700 GATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCTTGGATCTTGGCCTTAACATT 579641 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||| | || || |||| ||||| ||||| || || | |||||||| Sbjct 579640 CTCAATAGTATCGGATGGCTCAACTTCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCAC 579581 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 579580 GAAGATCTGCAT 579569 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| || | || ||||| |||||||| || || Sbjct 579988 CTCTTTCTGGATGTTGTAGTCAGACAGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAA 579929 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 || | ||||||||||| | ||||| | ||||| | | ||| ||| | ||| | | Sbjct 579928 GATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTAT-CTTGAATTTTGGCCTTGACAT 579870 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | || || | || || |||| ||||| |||||||| ||||| || |||| Sbjct 579869 TCTCAATGGTATCAGATGGCTCAACTTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCA 579810 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 579809 CGAAAATCTGCAT 579797 >seq1475 Length=480095 Score = 84.2 bits (92), Expect = 2e-11 Identities = 134/191 (70%), Gaps = 1/191 (1%) Strand=Plus/Plus Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || || ||||| || | | || ||| | || || | ||| ||||| ||||| Sbjct 62652 CCTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAA 62711 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||| | || | | |||||| ||| |||||| ||| | | || Sbjct 62712 ATCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGTATCTTTGCCTTGACATTT 62771 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | || ||||| | || || ||||||||||| | ||||||||| Sbjct 62772 TCAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACA 62831 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 62832 AAAATTTGCAT 62842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450447784959600