Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq59 118 1e-21 seq316 114 2e-20 seq254 107 3e-18 >seq59 Length=4169348 Score = 118 bits (130), Expect = 1e-21 Identities = 193/274 (70%), Gaps = 17/274 (6%) Strand=Plus/Minus Query 37339 TATTTCAGTCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTA-----GAG 37393 || || ||||||||||| ||||| |||| |||||||||| | || | || || Sbjct 38629 TAATTTAGTCCTGTTGAGCCAAATCCTTTAGCTCCTCTAACCGTGCAATTTAATTTGTCA 38570 Query 37394 ATTGT-ACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTA 37452 ||||| | ||| | | || ||||| |||| |||| | | |||| || || ||||| Sbjct 38569 ATTGTAATTTCCTCAACTTCGGGATAGAATATGCGTTCACATATTATTTGTGCAATTCTG 38510 Query 37453 TCGCCCGTATTTATTTTAAAAT---TACATTTTCCAT-TATTTATCAGAATGACTCCAAT 37508 || || |||||| |||||| | ||| || || ||| | || | || ||||| Sbjct 38509 TCCCCAATATTTACTTTAAACTCGGTAC----TCGATAAATTAAACAATAATACACCAAT 38454 Query 37509 ATTCCCCCTATAATCTTCATCGATTACTCCGCCTCCTACATCAATACC---TTTTAGAGA 37565 ||| || |||||||||| ||| || |||||| ||||||| | ||| || ||||| || Sbjct 38453 ATTTCCTCTATAATCTTTATCAATAACTCCGGCTCCTACGTGAATCCCATATTTTAATGA 38394 Query 37566 CAAACCCGATCTAGGAGCTATTCTTCCATAACAA 37599 || || ||||| || ||||| | |||||| ||| Sbjct 38393 TAACCCTGATCTGGGCGCTATCCGTCCATAGCAA 38360 >seq316 Length=1680448 Score = 114 bits (126), Expect = 2e-20 Identities = 191/273 (70%), Gaps = 16/273 (6%) Strand=Plus/Plus Query 37339 TATTTCAGTCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTAC-----CATCTAGAG 37393 || || ||||||||||||||||| |||| ||||||||| |||| | || | Sbjct 1398024 TAATTTAGTCCTGTTGATCCAAATCCTTTCGCTCCTCTAACTGTGCATTTTAATTTGTCA 1398083 Query 37394 ATTGTACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTAT 37453 |||||| || ||| |||||||| |||| |||| | | ||||| || || ||||| | Sbjct 1398084 ATTGTAATTTCCTCAATTCAGGATAGAATATGCGTTCACATATTAGTTGTGCAATTCTGT 1398143 Query 37454 CGCCCGTATTTATTTTAAAAT---TACATTTTCCAT-TATTTATCAGAATGACTCCAATA 37509 | || |||||| |||||| | ||| || || ||| | || | || |||||| Sbjct 1398144 CCCCAATATTTACTTTAAACTCGGTAC----TCGATAAATTAAACAATAATACACCAATA 1398199 Query 37510 TTCCCCCTATAATCTTCATCGATTACTCCGCCTCCTACATCAATACC---TTTTAGAGAC 37566 || || | |||||||| ||| || || || ||||||| | ||| || ||||| | Sbjct 1398200 TTGCCTCAATAATCTTTATCAATAACACCAGCTCCTACGTGAATCCCATATTTTAATAAT 1398259 Query 37567 AAACCCGATCTAGGAGCTATTCTTCCATAACAA 37599 || || ||||| || |||| | |||||||||| Sbjct 1398260 AACCCTGATCTGGGCACTATCCGTCCATAACAA 1398292 >seq254 Length=3229631 Score = 107 bits (118), Expect = 3e-18 Identities = 141/195 (72%), Gaps = 3/195 (2%) Strand=Plus/Plus Query 39668 AATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCA 39727 || || ||||| ||||| || |||||||| |||||||| || |||| ||| || || Sbjct 2115781 AAGGTTAGTCCGGGCATGAGGCCACGCTTCTTGAGCCAGAAGATGGAAGCGAAGCTACCG 2115840 Query 39728 GAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTG---TA 39784 || |||||||| || || ||||| || || || |||| | ||| || | ||| | Sbjct 2115841 GAGAAGAAGATACCCTCGACTGCAGCGAACGCTACAATACGCTCACCAAACGTTGCGGTC 2115900 Query 39785 TCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCT 39844 || | ||||||| | ||||||||||||||| ||| ||||| ||||||||||| Sbjct 2115901 TCGCTGGCGATCCACTGCAATGCCCAATCAGCTTTGCGCTTGACACAGGGCATTGTTTCG 2115960 Query 39845 ATAGCATTAAAGAGA 39859 || || || || ||| Sbjct 2115961 ATGGCGTTGAACAGA 2115975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686381855086800