Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5419 98.7 1e-15 seq254 89.7 6e-13 >seq5419 Length=38822 Score = 98.7 bits (108), Expect = 1e-15 Identities = 257/382 (67%), Gaps = 10/382 (3%) Strand=Plus/Plus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 |||| |||| || || ||||| || || || || || ||| ||| ||||| || Sbjct 32384 ACGGGAATCTGCCGGTCGAAGCGGCCGGGACGCAGCAGCGCGGGGTCGAGGATGTCGGGA 32443 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 ||||| ||||||||||||| | || ||| || || | | ||||| |||||||| | | Sbjct 32444 CGGTTGGTCGCCGCGATGAGGATGACGCCGGTGCGGTCACCGAAGCCGTCCATCTC-GAC 32502 Query 14171 AAG-AGTTGATTGATGGTTTGTTCGCGTTCATCAT--TCGCAGGCATACCACCCGCACTG 14227 || || || |||| ||| || |||||||| || | ||| | | ||||||| Sbjct 32503 GAGCAGCTGGTTGAGGGTCTGCTCGCGTTCGTCGTGACCGCCGCC--GAGGCCCGCACCA 32560 Query 14228 CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA-TGGTTGATTTTCACG 14286 || || ||| |||||||| || || || | ||| | ||| || || || | | | | Sbjct 32561 CGCTGGCGACCCACGGCGTCGATCTCGTCCACGAAGATGATGCAGGGGCTGTTCTGCTTG 32620 Query 14287 GGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 | | | || || | || ||||| | ||| |||||||| || |||||||| || || Sbjct 32621 GCCTGC-TCGAACAGGTCGCGCACGCGGGAGGCGCCGACACCGACGAACATCTCGACGAA 32679 Query 14347 ATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGA 14405 | | | ||| | || | || ||| || ||| | ||| || || | ||| || |||| Sbjct 32680 GTCCGAGCCGG-AGATGGTGAAGAACGGCACGCCCGCTTCGCCGGCCACGGCGCGCGCGA 32738 Query 14406 GGAGGGTCTTCCCCGTCCCTGG 14427 | || ||||| || || || || Sbjct 32739 GCAGCGTCTTACCGGTGCCGGG 32760 >seq254 Length=3229631 Score = 89.7 bits (98), Expect = 6e-13 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 |||||||||| ||||| |||||||| |||| || || |||||||| || ||||||| Sbjct 2115752 CCTCGTCACGTGAGATCAGTTCATTGCTGAAGGTTAGTCCGGGCATGAGGCCACGCTTCT 2115811 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 | | |||||| || | | || || ||||||||||| ||||| || ||||||| Sbjct 2115812 TGAGCCAGAAGATGGAAGCGAAGCTACCGGAGAAGAAGATACCCTCGACTGCAGCGAACG 2115871 Query 130155 CAAAGAGACGCTCAGCAAA 130173 | | | ||||||| |||| Sbjct 2115872 CTACAATACGCTCACCAAA 2115890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617960782897200