Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq811 102 9e-17 seq254 93.3 5e-14 >seq811 Length=1020237 Score = 102 bits (112), Expect = 9e-17 Identities = 278/419 (66%), Gaps = 19/419 (5%) Strand=Plus/Plus Query 9604 TTCATTA---TCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTC 9660 ||||||| || |||||||||||||| || | ||||| | |||||||||| ||| Sbjct 412090 TTCATTAGACTCGAAACCATCCATCTCAACCAGTAACTGGTTTAATGTTTGTTCCCTTTC 412149 Query 9661 ATCATTCGCTGGCA-TACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAA 9719 || || | | || | ||| | ||| ||| | ||||| ||||| || || || | Sbjct 412150 GTCGTT-ACCGCCACCAAGACCGATGCCGCGATGCCTACCCACCGCATCTATTTCGTCTA 412208 Query 9720 TGAAGACGATGCATGGTTGATTTTCGCGAGC---GACTTCAAAGAGATCCCGTACACGCT 9776 |||| | || || || ||||| | || || ||||| | |||||| ||||| Sbjct 412209 TGAAAATTATACAAGGAGCATTTT-TCTTGCCTTGA--TCAAACATATCCCGGACACGGC 412265 Query 9777 TGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGA 9836 | || || ||||| |||||||| || || || | | | ||| | || || | Sbjct 412266 TTGCACCAACACCGACAAACATTTCAACGAAATCAGATCCAGAAATACTAAAAAACGGTA 412325 Query 9837 CATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCG 9896 |||||| |||||| ||||| || || || || ||||| ||||| || || || ||| Sbjct 412326 CATTAGCTTCACCTGCAATTGCACGAGCAAGTAGAGTTTTACCAGTTCCAGGGGAACCAA 412385 Query 9897 CGAGGAGGGCACCTCGTGGAATCTTGGCGC----CACTTCCAAAGTATCTCTCAGGTTGC 9952 | || ||| ||| ||||| | | ||||| || | | || ||| Sbjct 412386 TTAAAAGACATCCTTTTGGTATCTTCCCACCTAACACTTGAAATTTTTGCCT----TTGT 412441 Query 9953 TTAAGAAAATCCACAATTTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 10011 ||||||||||| |||||||| |||| || ||||| || | |||||||| ||||||| Sbjct 412442 TTAAGAAAATCAACAATTTCAACCAACTCTTCTTTTGCTTCATCAATCCCAGCAACATC 412500 >seq254 Length=3229631 Score = 93.3 bits (102), Expect = 5e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 94723 GCCATCCAAACAGTTCCGTGTATTCAAAAG-AAAGCGGATTGGGCTATGAAGTGGTTTGA 94781 |||||| ||||| | || ||| | ||| | ||||| |||||||| || ||||| | | Sbjct 2115965 GCCATCGAAACAATGCCCTGTGT-CAAGCGCAAAGCTGATTGGGCATTGCAGTGGATCGC 2115907 Query 94782 TACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTT 94841 | || | | |||| |||||| | | || || || || ||||||||||| Sbjct 2115906 CAGCGAGACCGCAACGTTTGGTGAGCGTATTGTAGCGTTCGCTGCAGTCGAGGGTATCTT 2115847 Query 94842 CTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCT 94901 |||||| ||| |||| | || | |||||||||||||| || |||||||| || || Sbjct 2115846 CTTCTCCGGTAGCTTCGCTTCCATCTTCTGGCTCAAGAAGCGTGGCCTCATGCCCGGACT 2115787 Query 94902 CTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 |||| ||| || || ||||| |||||||||| Sbjct 2115786 AACCTTCAGCAATGAACTGATCTCACGTGACGAGG 2115752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582813366058800