Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq907 95.1 1e-14 seq254 87.8 2e-12 >seq907 Length=523837 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 20605 TATCCCCCAGAACCTCAAGGACATTTACAGGACCGTATGGGAAATCCCACAGAAGAGCAT 20664 |||||||||| | || ||||| | |||| ||| || ||||| || | ||||| | ||| Sbjct 411828 TATCCCCCAGGATCTGAAGGATCTGTACAAGACTGTGTGGGAGATATCGCAGAAAACCAT 411887 Query 20665 CATCGACATGGCGGCCGATCGCGGCGCCTACATCGACCAGTCCCAGTCGCTCAATGTCTT 20724 || | |||||||| || || || || | |||||||||||| || ||||| ||||| Sbjct 411888 ACTCAAGATGGCGGCAGACCGAGGAGCTTTCATCGACCAGTCACAATCGCTAAATGTTCA 411947 Query 20725 CATGGAGAATCCGAGCCTGGCGAAGCTGAGCTCCATGCATATGTACGGCTGG 20776 ||| | | || || |||||| ||||||||| ||||| |||||| Sbjct 411948 CATTGCTGAGCCCTCGTACGCCAAGCTGTCCTCCATGCACATGTATGGCTGG 411999 >seq254 Length=3229631 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/189 (71%), Gaps = 13/189 (7%) Strand=Plus/Minus Query 59931 AAAGCAGAATGGGCCATGCAGTGGAT-------GAGTCCTGGAGCATCATTTGCACAACG 59983 ||||| || ||||| |||||||||| ||| || ||| | |||| | || Sbjct 2115935 AAAGCTGATTGGGCATTGCAGTGGATCGCCAGCGAGACC----GCAACGTTTGGTGAGCG 2115880 Query 59984 TCTCATAGCTTTTGCATGC-GTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTT 60042 | | |||| || || ||| || || || ||||||||||| || ||| | | || | Sbjct 2115879 TATTGTAGCGTTCGC-TGCAGTCGAGGGTATCTTCTTCTCCGGTAGCTTCGCTTCCATCT 2115821 Query 60043 TCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCC 60102 |||||||||| ||||||||||||||||| || || | ||| ||| || ||||| || | Sbjct 2115820 TCTGGCTCAAGAAGCGTGGCCTCATGCCCGGACTAACCTTCAGCAATGAACTGATCTCAC 2115761 Query 60103 GGGACGAGG 60111 | ||||||| Sbjct 2115760 GTGACGAGG 2115752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548104012912800