Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq213 107 2e-18 seq254 96.9 4e-15 seq907 87.8 2e-12 >seq213 Length=2683303 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||| |||| || ||||||||| |||||||| || || | || || ||||| Sbjct 1999268 GTGAAGATATATCTGGGGCTGGCCGCGTCCTTGCCGCCCTGTAGTCTTGTGCCGAACTGA 1999209 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || ||||| | ||||||| ||| ||| | || || || ||||| | Sbjct 1999208 CCAATAGGCTGCAGCAGGTTCAAGTTGTTGCTGCCGACGTAGTTTTGCGCTAAATTGATG 1999149 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || ||| | || | |||||||||||||||||||| || || || | | || Sbjct 1999148 ATTGTGGACATGAGCGACATTTCACCGTGGTGATACGCCGAGTGTTCGGCCACTGAACCT 1999089 Query 152209 GCCAACTGCGCCACCTTCATGTCC 152232 |||| |||||||||||| || ||| Sbjct 1999088 GCCAGCTGCGCCACCTTGATCTCC 1999065 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| || || | | ||| || || |||||||| || || | || ||||| || Sbjct 1999268 GTGAAGATATATCTGGGGCTGGCCGCGTCCTTGCCGCCCTGTAGTCTTGTGCCGAACTGA 1999209 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| || ||||||| ||||||| ||| || ||||||| || || |||| Sbjct 1999208 CCAATAGGCTGCAGCAGGTTCAAGTTGTTGCTGCCGACGTAGTTTTGCGCTAAATTGATG 1999149 Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 || || || | ||| | ||||| ||||||||||||| || || ||||| | | Sbjct 1999148 ATTGTGGACAT--GAGCGACATTTCACCGTGGTGATACGCCGAGTGTTCGGCCACTGAAC 1999091 Query 117483 CCGCCAGCTGAGCCACCTTCATGTC 117507 | |||||||| |||||||| || || Sbjct 1999090 CTGCCAGCTGCGCCACCTTGATCTC 1999066 >seq254 Length=3229631 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || |||||||| |||||||||||||||||||| || |||||||| |||||||||||||| Sbjct 2110407 TATTCACCGACTCGCTTTTCAAAAAAGTTGGTTTTGCCTTCCAAAGAGATGTTCTCCATA 2110466 Query 74523 CAGTCGAAAGGGTTCT 74538 |||| ||||| |||| Sbjct 2110467 AAGTCAAAAGGATTCT 2110482 >seq907 Length=523837 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/227 (69%), Gaps = 12/227 (5%) Strand=Plus/Plus Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 ||||| ||| | | || ||| || ||| ||||| |||||||| || || |||||| Sbjct 389474 AGCTGTTTCTTAATAGCTATGCGTGAAGACAGTATCGAAGGCATCTATGACACTCTCAAG 389533 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGG------TATCCACTGCTCGAAC 53443 ||||||| | |||||||||| | ||||||||||| ||| ||||| | || Sbjct 389534 CAGTGTGCACTTATCTCCAAGTCAGCTGGTGGTATCGGAGTACATATACACTG-TATAA- 389591 Query 53444 GTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCT 53503 | || || ||||| ||| || || || || || | |||| | || || Sbjct 389592 ----GAGCCAAAGGCACGTACATCGCTGGTACCAATGGAGTGTCTAATGGTCTTGTACCC 389647 Query 53504 ATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGG 53550 ||||| || || |||||||||||||| || ||||| ||||||| || Sbjct 389648 ATGCTTCGAGTGTTCAACAACACGGCACGTTACGTAGACCAGGGAGG 389694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546796216926000