Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq154 201 1e-46 seq1475 140 4e-28 seq1481 109 6e-19 seq213 91.5 2e-13 seq204 91.5 2e-13 >seq154 Length=1683969 Score = 201 bits (222), Expect = 1e-46 Identities = 183/231 (79%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || ||||| ||||| | ||||||||| || | Sbjct 580253 ATGCAGATTTTCGTGAAGACCCTAACAGGAAAGACAATTACCTTGGAGGTTGAGCCATCT 580312 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| | ||||||||| |||| || ||||| |||||||||||||||||| Sbjct 580313 GATACCATTGAAAATGTCAAGGCTAAAGTTCAAGATAAGGAAGGAATTCCTCCAGACCAG 580372 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || ||||||| || ||||| | ||||| || Sbjct 580373 CAGCGACTTATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTTTCGGACTACAAC 580432 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| |||||||| || |||||| ||||| | || ||||| ||||| ||| Sbjct 580433 ATCCAGAAGGAATCTACACTTCATTTAGTCCTTCGCCTTCGTGGTGGTCAA 580483 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || || ||||| ||| | || |||||| || Sbjct 578376 ATGCAGATCTTCGTGAAGACATTGACTGGTAAAACTATCACTTTAGAAGTTGAGCCATCC 578435 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | |||||||| ||||| || ||||| |||||||||||||||||| Sbjct 578436 GATACCATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCTCCAGACCAG 578495 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || |||||||||||||| || |||| |||||||| | ||||| || Sbjct 578496 CAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTCTCCGACTACAAC 578555 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | ||| |||| ||||| || || Sbjct 578556 ATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCGACTTCGAGGAGG 578602 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | ||||| || || || ||| | || |||||| || | Sbjct 579797 ATGCAGATTTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCT 579856 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| ||| | ||||| |||||||| || ||||| |||||||||||||||||| Sbjct 579857 GATACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCAG 579916 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || |||||||||||||| || |||| |||||||| | ||||| || Sbjct 579917 CAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTGTCTGACTACAAC 579976 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || | ||| |||| || || || || Sbjct 579977 ATCCAGAAAGAGTCCACCCTCCACTTGGTCCTGCGACTACGAGGAGG 580023 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || ||||| || || || || || | || |||||| || | Sbjct 578832 ATGCAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGAGCCATCT 578891 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||||| || || || || ||||| |||||||||||||||||| Sbjct 578892 GATACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 578951 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||| ||||| || || |||| ||||| || | ||||| || Sbjct 578952 CAGCGACTCATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACTCTGTCTGACTACAAC 579011 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| || || | ||| |||| ||||| || || Sbjct 579012 ATCCAGAAAGAGTCCACCCTCCACTTGGTCCTGCGACTTCGAGGAGG 579058 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| || || || ||||| || || | || |||||| | | Sbjct 578604 ATGCAGATTTTCGTGAAGACCCTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCT 578663 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || | || || ||||| || || || || |||||||| ||||||||| Sbjct 578664 GATACCATCGAGAACGTAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGACCAG 578723 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || ||||||||||| || || |||| |||||||| | ||||| ||| Sbjct 578724 CAGCGACTCATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 578783 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | ||| |||| ||||| || || Sbjct 578784 ATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCGACTTCGAGGAGG 578830 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || || || ||||| || || || || || | || |||||| || Sbjct 579569 ATGCAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGAGCCATCC 579628 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| | ||||| || || || || ||||| |||||||||||||||||| Sbjct 579629 GATACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 579688 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || || |||||||| || || || |||| |||||||| | ||||| || Sbjct 579689 CAGCGACTCATCTTCGCTGGTAAACAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 579748 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || | ||| |||| || || || || Sbjct 579749 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTGCGACTGCGAGGAGG 579795 Score = 102 bits (112), Expect = 9e-17 Identities = 101/131 (77%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 27502 AAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGAT 27561 ||||| ||||||||||||||||||||||| || || || ||||| ||||| || || ||| Sbjct 578244 AAGGAAGGAATTCCTCCAGACCAGCAGCGACTTATCTTCGCTGGAAAGCAGCTGGAAGAT 578303 Query 27562 GATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGT 27621 | |||||||| | ||||| || |||| ||||| || || || || | ||| |||| Sbjct 578304 GGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCAACCCTCCACTTGGTCCTGCGA 578363 Query 27622 CTTCGCGGTGG 27632 || || || || Sbjct 578364 CTACGAGGAGG 578374 >seq1475 Length=480095 Score = 140 bits (154), Expect = 4e-28 Identities = 148/194 (76%), Gaps = 1/194 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || || || || || || ||||| |||||||| ||| || Sbjct 62842 ATGCAAATTTTTGTGAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTCGAGCCATCA 62783 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || || ||||| ||||||||||| || ||||||||| Sbjct 62782 GACACTATTGAAAATGTCAAGGCAAAGATACAGGATAAGGAGGGAATCCCCCCAGACCAG 62723 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || |||||||| ||||| || | || |||| ||||| || | ||||| ||| Sbjct 62722 CAGCGACTGATTTTTGCCGGTAAACAGTTAGAAGATGGGCGTACTCTCTCTGACTACAAT 62663 Query 27586 GTCCA-AAAGGAAT 27598 | || ||||| || Sbjct 62662 ATACAGAAAGGTAT 62649 >seq1481 Length=432034 Score = 109 bits (120), Expect = 6e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||||| |||| ||| |||||||||| || || ||||| || ||||| || |||||||| Sbjct 222263 TGATACAATTGAAAACGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCCCCAGACCA 222204 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | |||||||| || || || | || |||| ||| || || | || || || Sbjct 222203 GCAGAGATTGATTTTTGCAGGAAAACAGTTGGAAGATGGTCGCACACTTTCTGATTACAA 222144 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | |||||||| ||||| ||||| || || ||||||| | ||||| Sbjct 222143 CATTCAAAAGGAGTCCACACTTCACCTTGTGCTGCGTCTGAGAGGTGG 222096 >seq213 Length=2683303 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 32047 GACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCAGAGCAAACGGCCTATCACCACGGC 32106 || || ||||||||||||||| | || | ||||| || || |||| ||||||||||| Sbjct 1999066 GAGATCAAGGTGGCGCAGCTGGCAGGTTCAGTGGCCGAACACTCGGCGTATCACCACGGT 1999125 Query 32107 GAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAAC 32166 || ||||||| | ||| || |||| | || || |||| ||||| || ||| Sbjct 1999126 GAAATGTCGCTCATGTCCACAATCATCAATTTAGCGCAAAACTACGTCGGCAGCAACAAC 1999185 Query 32167 CTGAACTTACTCGAGCCATCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCT 32226 ||||| | || |||| ||| ||||| || || | || || |||||||| || Sbjct 1999186 TTGAACCTGCTGCAGCCTATTGGTCAGTTCGGCACAAGACTACAGGGCGGCAAGGACGCG 1999245 Query 32227 GCGAGCTCCCGTTACATCTTCAC 32249 || ||| || | || |||||||| Sbjct 1999246 GCCAGCCCCAGATATATCTTCAC 1999268 >seq204 Length=3085492 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 27508 GGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGT 27567 ||||||||||| || |||||| | || |||||||||||||| || | || |||| |||| Sbjct 1220815 GGAATTCCTCCTGATCAGCAGAGACTGATTTTTGCTGGTAAACAGTTGGAAGATGGTCGT 1220874 Query 27568 ACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGC 27627 || | | |||||||| |||| ||||| ||||| ||||| | || ||| | || || Sbjct 1220875 ACATTGTCTGACTATAACATCCAGAAGGAGTCCACACTTCACTTGGTGTTGAGGCTGCGA 1220934 Query 27628 GGTGG 27632 || || Sbjct 1220935 GGGGG 1220939 Score = 82.4 bits (90), Expect = 9e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||||||||| || | || || ||||| || || || |||||||| | Sbjct 1215656 AATGCAGATCTTTGTCAAAACTTTGACAGGGAAGACAATCACCCTAGAGGTTGAACCGTC 1215715 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 ||||| |||| |||| |||| |||||||| ||||| || ||||| Sbjct 1215716 TGATACTATTGAAAATGTGAAAGCTAAAATCCAGGATAAAGAGGG 1215760 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569872900634400