Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq154 107 1e-18 seq1481 105 4e-18 seq1475 104 1e-17 >seq154 Length=1683969 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| || |||| ||||| ||||| ||| ||| || || ||||| || || || Sbjct 580023 CCTCCTCGTAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 579964 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| ||||| ||||| || || || | ||||| ||||| || || Sbjct 579963 AGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGA 579904 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| ||| ||| ||| | || || | ||| || || ||| || Sbjct 579903 ATTCCTTCCTTATCT-TGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAAC 579845 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || ||||||||||| || || ||||| ||||||||||| Sbjct 579844 TTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || |||| ||| |||| ||||| ||||| || |||||| || || || || || || Sbjct 578830 CCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGAG 578771 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || ||||| || || || | ||||| ||||| || || Sbjct 578770 AGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGA 578711 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA-ATTGTGTCTTCGCTCTCCAC 34658 | ||| || || ||| ||| ||| | ||| ||| | || || || ||| || Sbjct 578710 ATTCCTTCTTTATCTTGGAT-TTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCTCAAC 578652 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| || || || || || |||| || ||||| ||||||||||| Sbjct 578651 TTCCAATGTGATGGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 578604 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| || | || ||||| || || ||||| || ||||| || || ||| Sbjct 580479 CCACCACGAAGGCGAAGGACTAAATGAAGTGTAGATTCCTTCTGGATGTTGTAGTCCGAA 580420 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || ||||| | || ||||| || || || || || || | ||||| ||||| || || Sbjct 580419 AGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGA 580360 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | ||| ||||| ||| ||| |||| | || || | ||| || || ||| || Sbjct 580359 ATTCCTTCCTTATCT-TGAACTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCAAC 580301 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || |||| || ||||| ||||||||||| Sbjct 580300 CTCCAAGGTAATTGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 580253 >seq1481 Length=432034 Score = 105 bits (116), Expect = 4e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| ||||||| ||| | || || ||| ||||||||||||||| ||||| ||| Sbjct 222096 CCACCTCTCAGACGCAGCACAAGGTGAAGTGTGGACTCCTTTTGAATGTTGTAATCAGAA 222155 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 ||||| || | ||||| | ||||| || ||||| || || | ||| ||||| || || Sbjct 222156 AGTGTGCGACCATCTTCCAACTGTTTTCCTGCAAAAATCAATCTCTGCTGGTCTGGGGGG 222215 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | ||| || |||||| |||||| Sbjct 222216 ATTCCTTCTTTGTCTTGGATCTT 222238 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34519 TTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATT 34578 |||||||| || || || || | ||||| | ||||| | || || |||||||| || Sbjct 233767 TTTTGAATATTGTAGTCCGACAACGTTCGGCCATCTTCTAACTGCTTCCCGGCAAAGATC 233826 Query 34579 AAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAA 34638 | ||||| || || || || | || ||||||||| ||||| | ||||| | Sbjct 233827 AGGCGCTGCTGATCAGGAGGAATCCCTTCCTTGTCTTGAATCTTC-GCCTTAACATTCTC 233885 Query 34639 -ATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAA 34697 || ||||| | ||| || |||| || |||||||| || || | ||| || ||||| Sbjct 233886 GATCGTGTCAGAGGGCTCTACCTCCAACGTAATCGTTTTTCCTGTGAGCGTCTTTACAAA 233945 Query 34698 AATCTGCATGTT 34709 |||||||||||| Sbjct 233946 AATCTGCATGTT 233957 >seq1475 Length=480095 Score = 104 bits (114), Expect = 1e-17 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 34517 CCTTT-TGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAAT 34575 ||||| || || || || || || || || ||| | ||||| | |||||||||||||| Sbjct 62652 CCTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAA 62711 Query 34576 ATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGA 34634 || | ||||| ||||| || || | ||||||||| | |||| |||||| || | Sbjct 62712 ATCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGT-ATCTTTGCCTTGACATT 62770 Query 34635 TAAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCAC 34694 | ||| |||||| ||| || || | ||| || |||||||| || | |||||||| Sbjct 62771 TTCAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCAC 62830 Query 34695 AAAAATCTGCATGTTG 34710 |||||| ||||||||| Sbjct 62831 AAAAATTTGCATGTTG 62846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314494198979210