Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq154 109 5e-19 seq1481 102 7e-17 >seq154 Length=1683969 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || ||||| || || || || | || || | ||||| || || ||| Sbjct 579569 ATGCAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGAGCCATCC 579628 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| || || || || ||||| || ||||| || || || || || Sbjct 579629 GATACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAG 579688 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| || ||||| ||||||| | ||| | || || |||||| Sbjct 579689 CAGCGACTCATCTTCGCTGGTAAACAGCTGGAAGATGGCCGTACCCTCTCTGACTACAAC 579748 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || ||||| |||| |||| || || || Sbjct 579749 ATCCAGAAGGAGTCGACCCTCCACTTGGTCCTGCGACTGCGAGGAGGTAT 579798 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||||| || | || ||| | ||||| || || || Sbjct 579797 ATGCAGATTTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCT 579856 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||||| ||||| ||||||||||| || ||||| || || || || || Sbjct 579857 GATACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCAG 579916 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | ||| || || ||| ||||||| | ||| | || || |||||| Sbjct 579917 CAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTGTCTGACTACAAC 579976 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCG 27202 || || || ||||| ||| | || ||||| |||| Sbjct 579977 ATCCAGAAAGAGTCCACCCTCCACTTGGTCCTGCG 580011 >seq1481 Length=432034 Score = 102 bits (112), Expect = 7e-17 Identities = 138/190 (73%), Gaps = 2/190 (1%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| |||||||| || || || || || | ||||| | || || || || || Sbjct 233955 CATGCAGATTTTTGTAAAGACGCTCACAGGAAAAACGATTACGTTGGAGGTAGAGCCCTC 233896 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| |||| || || || ||||||||||| ||||| || || || ||||| Sbjct 233895 TGACACGATCGAGAATGTTAAGGCGAAGATTCAAGACAAGGAAGGGATTCCTCCTGATCA 233836 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACA 27165 ||||| | || | ||||| || || || ||||| | ||| |||| || || |||| Sbjct 233835 GCAGCGCCTGATCTTTGCCGGGAAGCAGTTAGAAGA-TGGCCGAACGTTGTCGGACTACA 233777 Query 27166 ACATTCAAAA 27175 | |||||||| Sbjct 233776 ATATTCAAAA 233767 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27072 AAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGCAAA 27131 || || |||||||||||||| || || || || || ||| | || || | || || ||| Sbjct 222238 AAGATCCAAGACAAAGAAGGAATCCCCCCAGACCAGCAGAGATTGATTTTTGCAGGAAAA 222179 Query 27132 CAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTACAT 27191 || |||||||| || || |||| ||||||||||||||||||||||| || | || Sbjct 222178 CAGTTGGAAGATGGTCGCACACTTTCTGATTACAACATTCAAAAGGAGTCCACACTTCAC 222119 Query 27192 TTGGTTTTGCGTTTGCGGGGTGG 27214 | || ||||| || | ||||| Sbjct 222118 CTTGTGCTGCGTCTGAGAGGTGG 222096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434584763222400