Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq13874 264 4e-66 seq20448 183 1e-41 >seq13874 Length=14992 Score = 264 bits (292), Expect = 4e-66 Identities = 487/701 (69%), Gaps = 26/701 (4%) Strand=Plus/Minus Query 39731 GGGTAGTCCCACTGCGTGACGGTGACGCCGTCCGCAGGACGGACCCACACCGGAAGGTGA 39790 |||||||||||| |||| | || |||||||| ||||| ||||||||||| | Sbjct 10863 GGGTAGTCCCACCCGGTGATGATGGCGCCGTCCTGCGGACGCTTCCACACCGGAATGGCG 10804 Query 39791 TCGACCAGGGGCTCGTTGGACATGATCACACCGGCCGCGTGCACGCCCATCTGGCGAACC 39850 ||| || |||||| ||||||||| || || || || |||||| | ||| | | Sbjct 10803 TCGGTGAGCGGCTCGGAGGACATGATGACCGCGCAGGCATGGACGCCCGCGTTGCGGATC 10744 Query 39851 AGACCTTCGAG--CCCGAGCGCAGTGTCGATCACCTCCTTCGA-GTCCTTGTCGTTCTCG 39907 ||||| ||||| |||||||| |||||| | || ||| |||| || | |||| Sbjct 10743 AGACCCTCGAGGCCCCGAGCG--GTGTCGTAGATCTTGG-CGACGTCCGGGTTGGACTCG 10687 Query 39908 TACAGGCCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATCCCC 39967 || |||| |||| | || || | ||| ||| |||| |||| | ||| || Sbjct 10686 ATGAGCGAGCGGACCTCGGCGGCTTCCTTGTACCGCTCGTGCGTGGGGTCGGTGATGCCG 10627 Query 39968 TCCAGGGGCATCGACGCGCCCATCACATCGGCCG-GGTA-CGCCTTGGTCAGCTTCTCGC 40025 | | | || | | |||| | | ||| | || | ||||||||| | || ||| Sbjct 10626 GCGACCGAGATGTCCTTGGCCATGA--TGGGCGGCGGCAGCGCCTTGGTGATCTGGTCGG 10569 Query 40026 CGACCTGGAAG---GGCTTGTCCA---GCACGCGGGCCGCGTCCTTCAT---CGCGTTGC 40076 ||| |||| |||| | | | |||||||||| | |||||| || ||| ||| Sbjct 10568 CGATGGCGAAGCCGGGCTGGCCGAACTGCACGCGGGCGGAGTCCTTGATGGCCGCCTTG- 10510 Query 40077 GCGCCTTGATCCGGCCGAAGGTCCCGATCTGTGCGACCTTGTCG--GCCCCGTACTTCTC 40134 | |||||| |||||| || | ||| || ||| |||| ||||| ||||||| Sbjct 10509 --GTCTTGATGGTGCCGAACGTGATCACCTGGGCCACCCGGTCGCTGCCCC--ACTTCTC 10454 Query 40135 GGTGACGTACCGGATGACCTCGCCGCGACGCCGGTCATCGAAGTCGATGTCAACGTCGGG 40194 |||| |||| || | | ||||||||| || || || |||||||||||||| | |||||| Sbjct 10453 GGTGGCGTAGCGCACCATCTCGCCGCGGCGGCGATCGTCGAAGTCGATGTCGATGTCGGG 10394 Query 40195 CATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATC 40254 ||| ||||||||||||||||| ||||| |||||||||| || |||||| || || || Sbjct 10393 CATCGACACGCGCTCGGGGTTGAGGAAGCGCTCGAAGAGCAGTCCGTGCGGGAGCGGGTC 10334 Query 40255 GAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGG 40314 || || |||||| || | |||||| || || || ||||| ||||| || || || || Sbjct 10333 GATGTTGGTGATGCCCATCGCGTAGGCCACGAGGGACCCGGCGGCCGATCCACGACCCGG 10274 Query 40315 ACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTA 40374 ||||| | | ||| ||| || ||||| ||| |||| || |||||||| Sbjct 10273 TCCGACGCGGATACCGACCTCGCGCGCGTGCTTGATGAGGTCCCCGACCACGAGGAAGTA 10214 Query 40375 GGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTACT 40415 || |||||||||||||| || ||| | | |||||||||||| Sbjct 10213 GGCCGGGAAGCCCATCTCGAGGATGACGGCGATCTCGTACT 10173 >seq20448 Length=9219 Score = 183 bits (202), Expect = 1e-41 Identities = 293/411 (71%), Gaps = 10/411 (2%) Strand=Plus/Minus Query 41029 GTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCTTGGTACGACCGAGAGCTGA--GCTTC 41086 ||||||||||| |||| || ||| | ||||| | ||| |||| | || |||| Sbjct 484 GTCCATGCGCGCCCACTTGCCCAGCTGCCCCTCGATGGACG--CGAGCGACGACAGCTTG 427 Query 41087 ATGAGGTTGTGCAGGCCGGTCTTGTTCTCGGCGAGGATCGTGAGGTGGGTGTACGCACCG 41146 | ||||| |||| ||||| |||||| |||| || || | ||| |||||||| ||| Sbjct 426 AACAGGTTCCGCAGACCGGTGGCGTTCTCCGCGACCATGGTCATGTGCGTGTACGCGCCG 367 Query 41147 CGACCGCTCACGTCGTAACGCTTCTGGTCCTCGGT-GCCCCACTGCACCCGCTCCTGATC 41205 | || |||||||| |||||| | || | ||||||| |||| |||| || || Sbjct 366 CTGCCCGACACGTCGTCCGACTTCTGA-CTGCGATCGCCCCACAGCACGCGCTTCTTGTC 308 Query 41206 GAAGCGCGAGCCCGGAGCCATGTACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGC 41265 ||||||||| |||| || |||||||||||||| |||||||||||||||| || || Sbjct 307 GAAGCGCGACTCCGGCGCGATGTACGCCTCGATCCCGATGATCGGCTTGATGCCGGCCTT 248 Query 41266 CGTAGCTGTGGTGAAGAAGTCGTGCGCACCGTGCAGGTTGCCGTGGTCGGTGACGGCGAC 41325 | | || | || |||| ||| || |||| || ||||||||||||||| | | || Sbjct 247 CTTGGCCTCGTTGTAGAACTCGCTGGCCCCGTACATGTTGCCGTGGTCGGTCATTCCCAC 188 Query 41326 TGCCGGGGAGCCC-TGGCG-GGCGACCTCGGCGACCATCTGCTTCATCCGAGCGGCCCCG 41383 | || | ||| |||| ||| |||| |||| || | || ||| ||||| ||| Sbjct 187 CG-CGCTCATCCCGAGGCGCTGCG-CCTCCGCGAACAGCGGCGCGATCTTCGCGGCGCCG 130 Query 41384 TCGAGGAGGCTGTACTCGGAGTGGTTGTGGAGGTGAACGAACTCGGTCACG 41434 || || | | |||||||| ||| |||||||| |||||||| || | |||| Sbjct 129 TCCAGCATGGAGTACTCGGTGTGATTGTGGAGATGAACGAAGTCCGACACG 79 Score = 136 bits (150), Expect = 1e-27 Identities = 186/256 (73%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 38989 CTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTG 39048 ||||| |||||||||||| || || ||||||| ||||||||||||| |||||||||| Sbjct 3128 CTTGTCCTTGTCGTCGCCGACGGACGTGAGCAGACCCGCCATGTACTCCGCCGGGTAGTT 3069 Query 39049 CGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTT 39108 | ||| || || | || | ||| | || ||||||||| |||| | ||||| |||||| Sbjct 3068 GGCCTTGAGATAGCCGGTCCAGTACGAGACGAGCCCGTATCCCGCGGCGTGCGACTTGTT 3009 Query 39109 GAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGCGCTGTCCGA 39168 ||| ||||| || ||||| || | || |||||||| |||| ||||||| || || Sbjct 3008 GAACGCGTAGCCCGCGAACGGGAGGATGGTGTCCCACAGAGCCTTGATGGCGGGTTCGGA 2949 Query 39169 GTAGCCTCGCTCGCGCGC-TCCCTTCT-GGAAGTTCACGAACTCCTTGGCCAGAACCTCG 39226 | || | | | | || | |||||| |||| | || | ||| | || ||| | Sbjct 2948 GAAG--TTGTTGCCCAGCATGCCTTCTCGGAATCCCGCGTAGGCCTCCTCGAGCACCGAG 2891 Query 39227 GGCTTCTTCTTGCCCA 39242 ||||||||||||||| Sbjct 2890 AGCTTCTTCTTGCCCA 2875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160289500828380