Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028876.1 Length=109800 Score E Sequences producing significant alignments: (Bits) Value seq9379 196 3e-45 >seq9379 Length=20973 Score = 196 bits (216), Expect = 3e-45 Identities = 254/346 (73%), Gaps = 5/346 (1%) Strand=Plus/Minus Query 96515 ATCTCTCCGTCGGATACGAAAGCGCCCTGTATCCGGAT-GGCACCCCGCGCCCCCACGGG 96573 ||||| |||||| | ||| |||||||| | ||| | ||| || |||||||| || Sbjct 8293 ATCTCCTCGTCGGTGATGAAGGCGCCCTGCAGGCGGGTCGGCTTGCC-CGCCCCCATCGG 8235 Query 96574 CAGGAATAACCCGTCACCCATTCCCATGAGCTGCTCGGCTCCGCCCTCGTCCAGGATCAC 96633 |||||| | | |||| ||||| || ||||||| |||||| || || || ||||| || Sbjct 8234 CAGGAACAGCGCGTCGCCCATACCGATGAGCTTCTCGGCCCCCTGCTGATCGAGGATGAC 8175 Query 96634 CCGGCTATCGGTGAGTGATGCTGTGGCGAACGAGAGCCTAGACGGCACGTTGGATTTGAT 96693 ||| || ||||| || | |||||||| | || | ||||||||||||| ||||| Sbjct 8174 CCGCGAGTCCGTGAGCGACGACGTGGCGAAGGCCAGACGCGACGGCACGTTGGTCTTGAT 8115 Query 96694 AAGGCCTGTGACTACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAATACCGGC 96753 || || ||||| || ||||| ||||| ||||||||||| || || || || ||||| || Sbjct 8114 CAGACCGGTGACGACGTCCACCGAGGGACGCTGCGTCGCGAGCACCAGGTGGATACCCGC 8055 Query 96754 TGCGCGCGCCTTCTGGGCGATGCGGACAATGTTGGCCTCGACTTCTTTCTTGTAGCCGCC 96813 || ||||||||||| | |||||| || || ||||||| || || | | || Sbjct 8054 GGCACGCGCCTTCTGCGTGATGCGCACGATCGCTTCCTCGACGTC--TCGAGGCG-CGGT 7998 Query 96814 CATCATGAGGTCTGCGAGTTCGTCGACCACTACCACGATGTAGGGG 96859 |||||||||||| || || |||||||| | ||| |||||| ||| Sbjct 7997 CATCATGAGGTCCGCCAGCTCGTCGACGATCGCCAGGATGTACGGG 7952 Score = 122 bits (134), Expect = 6e-23 Identities = 394/612 (64%), Gaps = 16/612 (3%) Strand=Plus/Minus Query 96872 TCGGCGTGGCGCACGCCGGCTTCCTGCATCTGCCGGTACCGGTCATCCATCTCCACGGTG 96931 ||| | ||||| |||| | ||||||| | | |||| || | ||||||||| || Sbjct 7879 TCGACATGGCGTACGCGGTTGGCCTGCATGTCCTGGTAGCGCTGCTCCATCTCCTCGACC 7820 Query 96932 AGCCACCGCAGCGTCTTAACCGCCTCGTCGGGCTCGGTGACCACCGGCTGCAAAAGGTGG 96991 |||||| |||| |||||| | |||| |||| | ||| | ||||| Sbjct 7819 AGCCACGCGAGCGCGGCCGCCGCCTTCTTCGGCTGCGTGATGATCGGGGTGATGAGGTGC 7760 Query 96992 GGGATACCGTTGTACGGGGTGAGTTCCACCATCTTCGGGTCGATCATGATGAGTTTGACC 97051 ||||| || | ||| || || || || ||||||||||||||||| | ||| | || Sbjct 7759 GGGATGCCCTCGTAGGGCGTCAGCTCGACCATCTTCGGGTCGATGAGGATCATCCGTACT 7700 Query 97052 CGATCAGGATTGGCTCGGTAGAGCATGGAAACCAGCATCGAGTTGATGAAGCTGGACTTA 97111 || || | || || ||||| || |||||||||||||||| |||| ||||| Sbjct 7699 TCCTCGGGCGTCGCCCGAGCGAGCAGCGACACCAGCATCGAGTTGACGAAGGACGACTTG 7640 Query 97112 CCTGATCCGGTGGCGCCAGCCACCAGCAGGTGCGGCATTTTGGCCAGGTTCAGGGAAACG 97171 || || || || | || ||||||| |||||| ||||| ||||||||||| | ||| Sbjct 7639 CCCGAGCCCGTCGACCCGGCCACCAACAGGTGGGGCATCTTGGCCAGGTTGGCGCTGACG 7580 Query 97172 TCTTTGCCCTCGACNNNNNNNNNNACGGCGACGGTGAGCGGGTGGTCATCCT--CGG--- 97226 | |||||||| | ||| |||||||||| ||||| ||| Sbjct 7579 AAGTCGCCCTCGATGTCCTTCCCCAGCCCGATCACCAGCGGGTGGTGATCCTTCCGGGTG 7520 Query 97227 --GGACGATCTG-------CTG-CAACCGCACGGTCTGGCGTTCCGACCGGGGGAGTTCG 97276 || || || | | || ||||| ||| ||| || || || | ||| Sbjct 7519 CTGGGCGCGGTGAGCACGTCGGACAGGCGCACCATCTCGCGGTCGGAGTTCGGCACCTCG 7460 Query 97277 ATTCCTACGGCCGTTTTACCGGGGATGGGTGCAACCACCCGGACGCTCTCTGTTGCGAGC 97336 || || ||||| | || ||||||||||| || | || || ||| | || || || | | Sbjct 7459 ATGCCCACGGCGGACTTGCCGGGGATGGGCGCCAGCAGACGCACGTTGTCCGTGGCCACC 7400 Query 97337 GCGTAGGCCAACTGAGACTGTAGTTGTGAGACTTTCTGGATGCGCACACCGGGGCCCAAC 97396 |||||||| | | | || | || |||| | ||| || || |||| | Sbjct 7399 GCGTAGGCGATGTTGCGCGCGAGGGCGGTGATCTTCTCCACCTTCACGCCCGGACCCAGC 7340 Query 97397 GCAATCTCGTAGCGCGTGACGCTCGGCCCGTCGGTGCGACCGGTCACCTTGGCCTCTATG 97456 | | ||||||||| || ||| |||||||| |||| ||||| ||| ||| || || Sbjct 7339 TCCACCTCGTAGCGGGTCACGGTCGGCCCGCGGGTGAATCCGGTGACCGCGGCGTCGATC 7280 Query 97457 TCGAACT-CTCG 97467 | ||||| |||| Sbjct 7279 TTGAACTGCTCG 7268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350972494729770