Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq13874 246 1e-60 seq20448 197 4e-46 >seq13874 Length=14992 Score = 246 bits (272), Expect = 1e-60 Identities = 473/695 (68%), Gaps = 12/695 (2%) Strand=Plus/Minus Query 38637 CGGGTAGTCGAACTGCGTGATCGTCACGCCGTCCGCAGGCCGCACCCACGTAGGGATGTG 38696 ||||||||| || ||||| | |||||||| || ||| |||| || ||| Sbjct 10864 CGGGTAGTCCCACCCGGTGATGATGGCGCCGTCCTGCGGACGCTTCCACACCGGAATGGC 10805 Query 38697 GTCGACCAGCGGCTCGTCAGACATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGAC 38756 |||| ||||||||| |||||||| || || || || |||||| | |||| Sbjct 10804 GTCGGTGAGCGGCTCGGAGGACATGATGACCGCGCAGGCATGGACGCCCGCGTTGCGGAT 10745 Query 38757 GAGTCCTTCGAGGCCACGCGCGAGGTCGATGACCTCCTTCGCGTCCTTGTCGTTCTCGTA 38816 || || |||||||| || ||| |||| || || ||||| || | |||| Sbjct 10744 CAGACCCTCGAGGCCCCGAGCGGTGTCGTAGATCTTGGCGACGTCCGGGTTGGACTCGAT 10685 Query 38817 CAGCGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTC 38876 |||| |||| |||| | || || | ||| ||| |||| |||| ||||||||| | Sbjct 10684 GAGCGAGCGGACCTCGGCGGCTTCCTTGTACCGCTCGTGCGTGGGGTCGGTGATGCCGGC 10625 Query 38877 CAGGGGCATCGACGCGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGAC 38936 | | || | | |||| | | | ||| ||||||||| | || ||| ||| Sbjct 10624 GACCGAGATGTCCTTGGCCATGATGGGCGGCGGCAGCGCCTTGGTGATCTGGTCGGCGAT 10565 Query 38937 CTGGAAG---GGCTTGTCCA---GCACGCGGGCCGCGTCCTTCAT---CGCGTTGCGCGC 38987 |||| |||| | | | |||||||||| | |||||| || ||| ||| | Sbjct 10564 GGCGAAGCCGGGCTGGCCGAACTGCACGCGGGCGGAGTCCTTGATGGCCGCCTTG---GT 10508 Query 38988 CTTGATCCGTCCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGAC 39047 |||||| ||| |||| | ||| || ||| ||| ||||| ||||||||||| | Sbjct 10507 CTTGATGGTGCCGAACGTGATCACCTGGGCCACCCGGTCGCTGCCCCACTTCTCGGTGGC 10448 Query 39048 GTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGA 39107 ||| || | || ||||| ||||| || || |||||||||||||| | ||||||||| || Sbjct 10447 GTAGCGCACCATCTCGCCGCGGCGGCGATCGTCGAAGTCGATGTCGATGTCGGGCATCGA 10388 Query 39108 GACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTC 39167 || ||||| ||||| ||||| |||||||||| || ||||| |||| ||||| | || Sbjct 10387 CACGCGCTCGGGGTTGAGGAAGCGCTCGAAGAGCAGTCCGTGCGGGAGCGGGTCGATGTT 10328 Query 39168 GGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGAC 39227 |||||| || | ||||| || | || || || || || || || || || || ||||| Sbjct 10327 GGTGATGCCCATCGCGTAGGCCACGAGGGACCCGGCGGCCGATCCACGACCCGGTCCGAC 10268 Query 39228 CCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGG 39287 | | ||| ||| ||| ||||| ||| |||| ||||||||||| | ||| Sbjct 10267 GCGGATACCGACCTCGCGCGCGTGCTTGATGAGGTCCCCGACCACGAGGAAGTAGGCCGG 10208 Query 39288 GAACCCCATCTGGTTGATCATGTCGATCTCGTACT 39322 ||| ||||||| | ||| | | |||||||||||| Sbjct 10207 GAAGCCCATCTCGAGGATGACGGCGATCTCGTACT 10173 >seq20448 Length=9219 Score = 197 bits (218), Expect = 4e-46 Identities = 288/407 (71%), Gaps = 0/407 (0%) Strand=Plus/Minus Query 39935 CGTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCGCTGTACGAGCGAGAGGAGAGCTTGA 39994 |||||||||||| |||| || ||| | |||||| || ||| | | || || ||||||| Sbjct 485 CGTCCATGCGCGCCCACTTGCCCAGCTGCCCCTCGATGGACGCGAGCGACGACAGCTTGA 426 Query 39995 ACAGGTTGTGCAGGCCGGTCTTGTTCGTGGCGAGCATGGTCATGTGGGTGTAGGCACCCC 40054 ||||||| |||| ||||| |||| |||| |||||||||||| ||||| || || | Sbjct 425 ACAGGTTCCGCAGACCGGTGGCGTTCTCCGCGACCATGGTCATGTGCGTGTACGCGCCGC 366 Query 40055 GACCGCTCACGTCGTACCGCTTCTGCTCGGGCGTGCCCCACTGGACCCGCTCCTGGTCGG 40114 || |||||||| | |||||| | | ||||||| | || |||| || |||| Sbjct 365 TGCCCGACACGTCGTCCGACTTCTGACTGCGATCGCCCCACAGCACGCGCTTCTTGTCGA 306 Query 40115 AACGGTGCCCCGGTGCGACGTACGCCTCGATCCCGATGATGGGCTTGACCCCAGCGGCCT 40174 | || | |||| |||| ||||||||||||||||||||| ||||||| || || || Sbjct 305 AGCGCGACTCCGGCGCGATGTACGCCTCGATCCCGATGATCGGCTTGATGCCGGCCTTCT 246 Query 40175 GCCCCTGCGTGAAGAAGTCGTACGCACCATGCAGGTTGCCGTGGTCGGTCATCGCGAGGG 40234 ||| || |||| ||| || || | || |||||||||||||||||| | | | Sbjct 245 TGGCCTCGTTGTAGAACTCGCTGGCCCCGTACATGTTGCCGTGGTCGGTCATTCCCACCG 186 Query 40235 CTCTCATGCCCTGCGCCTTGGCCTCGGCGAACATGTCCTTCAGCCGAGCCGCCCCGTCGA 40294 | ||||| || | || ||||| ||||||| | | | || || ||||| | Sbjct 185 CGCTCATCCCGAGGCGCTGCGCCTCCGCGAACAGCGGCGCGATCTTCGCGGCGCCGTCCA 126 Query 40295 GCAGGCTGTACTCGGAGTGGACATGCAGGTGAACGAAGTCGGTCACG 40341 ||| | |||||||| ||| || || ||||||||||| | |||| Sbjct 125 GCATGGAGTACTCGGTGTGATTGTGGAGATGAACGAAGTCCGACACG 79 Score = 129 bits (142), Expect = 2e-25 Identities = 225/321 (70%), Gaps = 16/321 (5%) Strand=Plus/Minus Query 37837 ACGTCGGGCGGCAGGACCCGAAGGCCCA---TGCGCCTGCACTCGCCGAGGTA---CGTG 37890 |||||||||||||| || | || | |||| ||| ||| | ||||| || | Sbjct 3187 ACGTCGGGCGGCAGCACGGTGATCCCGAGCTTGCG---GCAGTCGGCCAGGTAGACCGCG 3131 Query 37891 GCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGG 37950 ||| |||| |||||||||||| || || ||||||| ||||||||||||| |||||| Sbjct 3130 GCC---TTGTCCTTGTCGTCGCCGACGGACGTGAGCAGACCCGCCATGTACTCCGCCGGG 3074 Query 37951 TAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCC 38010 |||| | ||| || || | || | ||| | || ||| ||||| |||| | ||||| | Sbjct 3073 TAGTTGGCCTTGAGATAGCCGGTCCAGTACGAGACGAGCCCGTATCCCGCGGCGTGCGAC 3014 Query 38011 TTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCC 38070 |||||||| ||||| || ||||| || | || |||||||| ||| |||||| | Sbjct 3013 TTGTTGAACGCGTAGCCCGCGAACGGGAGGATGGTGTCCCACAGAGCCTTGATGGCGGGT 2954 Query 38071 TCCGAGTAGCCTCGCTCGCTCGC-CCCCTTCT-GGAAGTTCACGAACTCCTTGGCCAGCA 38128 || ||| || | | | | || |||||| |||| | || | ||| | |||| Sbjct 2953 TCGGAGAAG--TTGTTGCCCAGCATGCCTTCTCGGAATCCCGCGTAGGCCTCCTCGAGCA 2896 Query 38129 CCTCGGGCTTCTTCTTGCCCA 38149 || | ||||||||||||||| Sbjct 2895 CCGAGAGCTTCTTCTTGCCCA 2875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159598804553340