Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq811 187 6e-43 seq2315 150 4e-32 seq2422 118 2e-22 >seq811 Length=1020237 Score = 187 bits (206), Expect = 6e-43 Identities = 295/420 (70%), Gaps = 2/420 (0%) Strand=Plus/Plus Query 24613 TATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACC 24672 |||| |||||||| ||||| | | |||| | || | | || ||| |||| |||| Sbjct 997953 TATAGATTTTCTTTCTAAAGATGATATTGTAACACTCATCTTGCATAGTTCTATGAAACC 998012 Query 24673 GTTCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCAT 24732 ||| || ||||| |||||||| ||| || | || ||| || || ||||| | | Sbjct 998013 TTTCACATATGCCATTAGTCTGTGGAGAGTTGGCTTTAGTTCTAGAATGATCAATGTTTT 998072 Query 24733 TTATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTC 24792 |||| | |||||||||| |||| |||||||||| |||||||||||| || | || | Sbjct 998073 CTATTCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCACAATACTCCGTACCCC 998132 Query 24793 GGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCT-TTCAAAGTATGGTAACACTTTA 24851 |||||||| |||||||| | || || | ||| ||||| |||| | ||| || Sbjct 998133 TATCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAAAAATGGAATGACTCTA 998191 Query 24852 TCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCC 24911 || || || | ||| ||||| | ||||| || | || |||||||| | | || Sbjct 998192 TCGTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCA 998251 Query 24912 ACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTG 24971 | | || |||||||| | ||| ||||| |||||||| | || | ||||||| ||| Sbjct 998252 AGTCTAGAATAAGTATCGACAAAAGTTTGCTGATAAATTCACCCTATACCTTTGATATTG 998311 Query 24972 CCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCA 25031 | |||||| | |||||||| || || | ||| || || ||| ||| |||||||||||| Sbjct 998312 CGCACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 998371 >seq2315 Length=89380 Score = 150 bits (166), Expect = 4e-32 Identities = 497/759 (65%), Gaps = 29/759 (4%) Strand=Plus/Plus Query 24504 AAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTA 24563 ||| |||| || || ||| ||||| | || ||||||| || || ||||| | ||| Sbjct 75307 AAGTTTGC-ATAGGAGTTTTGCCATAACAATATTTTCCTGAATATGGTCGATCATTATTG 75365 Query 24564 TAATACATTAACCACTCATCTAAATCCGC----TTGTAATGTCGTTAA-ATCCGTATAAA 24618 ||| | |||||| ||| | ||| | |||||| || | || ||| ||||||| Sbjct 75366 AAATGCTCTAACCAAATATCAAGATCTACGTAATTGTAAA-TCATCAAGATCTGTATAAA 75424 Query 24619 TTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGC 24678 | || |||| | || | | ||||||| | || ||||||| || || || | Sbjct 75425 TCTTTTTCCGCATCGCTGTGTCAAAGAATTCTTTTTTCATCGTTTTATTAAAACGCTCAC 75484 Query 24679 AGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTATTG 24738 | || || || || || ||| | | |||| |||||| | ||||| ||| | | ||| | Sbjct 75485 ACATACCATTTGTTTGGGGAGCATATGCCTTTGTTTTAGTATGTTCTATACCTTCTAT-G 75543 Query 24739 CT---AAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTC--ACTTCCTCG 24793 || |||||| |||| || | |||| |||| ||||| |||||| ||| | || Sbjct 75544 CTCAGAAATAA--CTCAAAAGCATGATGCTCTAAATTGCCCTTATATTCTGACT--CACG 75599 Query 24794 GTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATC 24853 || || | || || | || ||| |||||||| ||| | ||||||||||| ||| Sbjct 75600 ATCTGTAAGAATACGCAGTATTAGTATCCCTTGGCTCTCATACCATGGTAACACTCGATC 75659 Query 24854 ATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 24913 ||| |||||||| |||||| | || || || || ||||| ||||| ||| ||| || Sbjct 75660 ATTAAGCATATCAGCAGCAGTAATTGCTGTTTTATCAGTATATAGTTTAGCATCCGCTAC 75719 Query 24914 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 24973 || | || |||||||||| || ||||| ||| | ||||| | || || Sbjct 75720 CCTAGTATAGCTATCAATAAATACCTGAGAATAAACCTTACCTATACCTTTAAAATTACC 75779 Query 24974 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCCGTTTCAATTTCACCACA 25033 ||||| | ||||| || | || | ||| || || || ||| |||||||| ||| Sbjct 75780 TACATAATACGTATCCTGACATCCTATATAACCTGGATGCTGCGTCTCAATTTCTCCATG 75839 Query 25034 GGCAATCTCATCTTCTTTCTTACG---CTCTAAGGCTTGTACCTGTGTTTCACTGAGTAT 25090 || || | ||| || ||| ||||| |||||| ||| | |||| | || | Sbjct 75840 TGC---TTCTTTTTCATTACGACGCTTCTCTAGTACTTGTAACTGAGCTTCAGTAAGAAC 75896 Query 25091 AATACCTTGTTCTGCAACCAGTTT---TTCCAGGGCGATTAATCTTTGCTTAAAATTGGC 25147 ||| || ||||| | ||| || ||| | || || | |||| | | |||| Sbjct 75897 AATCCC--ATTCTG-AGCCATCTTTGCTTCTAATGCTATAAGCCTTTTACTGATATTGTT 75953 Query 25148 AAGATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTT 25207 | || || |||||||||||| || | || ||||| | ||| |||| || || ||| Sbjct 75954 TAAATCATTACGTAACCAAATTGATCTCACTCCTCCAGGTGATACAAGTATTCCGCTTTT 76013 Query 25208 ACGGAGTTCGTTACTCACTCTTACCTGTCCAAATGCCGG 25246 || || || ||||||| ||| ||| |||| || Sbjct 76014 CTTAAGCTCATTTGATACTCTTAGCTGACCATATGCTGG 76052 >seq2422 Length=64058 Score = 118 bits (130), Expect = 2e-22 Identities = 278/412 (67%), Gaps = 7/412 (2%) Strand=Plus/Minus Query 24504 AAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTA 24563 ||| |||| || || ||| ||||| | || ||||||| ||||| || | | ||| Sbjct 47098 AAGTTTGC-ATAGGAGTTTTGCCATAACAATATTTTCCTGAATGTGGCCGCTCATTATTG 47040 Query 24564 TAATACATTAACCACTCATCTAAATCCGCTTGTAATGTCGTTAA-ATCCGTATAAATTTT 24622 ||| | |||||| ||| | ||| |||||| || | || ||| |||||||| || Sbjct 47039 AAATGC--TAACCAAATATCAAGATCTAATTGTAAA-TCATCAAGATCTGTATAAATCTT 46983 Query 24623 CTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGAT 24682 |||| | || | | ||||||||| || ||||||| || || || || || Sbjct 46982 TTTCCGCATCGCTGTGTCAAAGAATTCTTGTTTCATGGTTTTATTAAAACGCTCACACAT 46923 Query 24683 GCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTACTGTGTTCAATATCATTTATTGCTAA 24742 || || || || ||| | | |||| |||||| | ||||| ||| | | || ||| | Sbjct 46922 ACCATTTGTTTGGGGAGAATATGCCTTTGTTTTAGTATGTTCTATACCTTCCAT-GCTCA 46864 Query 24743 ATAA-AGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTA 24801 || |||||| || | |||| | || ||||| |||||| || || || || | Sbjct 46863 GAAATAGCTCAAAAGCATGATGCTGTATATTGCCCTTATATTCTGACCCACGATCTGTAA 46804 Query 24802 ATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCA 24861 || || | || |||| |||||||| ||| | ||||||||||| |||||| |||| Sbjct 46803 GAATACGCAGTATTGGTATCCCTTGGCTCTCATACCATGGTAACACTCGATCATTAAGCA 46744 Query 24862 TATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 24913 |||| |||||| | || || || || ||||| ||||| ||| ||| || Sbjct 46743 TATCAGCAGCAGTAATTGCTGTTTTATCAGTATATAGTTTAGCATCCGCTAC 46692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114239884824440