Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028947.1 Length=62738 Score E Sequences producing significant alignments: (Bits) Value seq6092 125 3e-24 seq4588 86.0 3e-12 >seq6092 Length=27990 Score = 125 bits (138), Expect = 3e-24 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 30771 TCACCAGCCGCGTTGGCGCCATTCGTCGAGGCTCGGACGCTCGGCACCCAGAGTGGTGTC 30830 |||||| ||||| | ||||||||| ||||| ||| ||||||||||| || |||||||| Sbjct 4815 TCACCACCCGCGCTCGCGCCATTCCCCGAGGTGCGGGCGCTCGGCACCGAGCGTGGTGTC 4756 Query 30831 GTCGCCGTGCCCGGGATAGACGACCGTGCGGTCGTCGAAGCGATCAAACACCTTCGCTTC 30890 | |||||| |||||||||||||| ||| ||||||||| || | |||| ||| | || Sbjct 4755 CTTGCCGTGGCCGGGATAGACGACGGTGGAGTCGTCGAACCGCGCGAACAACTTGGTCTC 4696 Query 30891 AAGGTCGTTCATCAGCGAGTTGAA 30914 | |||||||| || ||| | ||| Sbjct 4695 GACGTCGTTCAGCAACGACTCGAA 4672 >seq4588 Length=49850 Score = 86.0 bits (94), Expect = 3e-12 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 593 TAGCTCAATTGGTAGAGCAGCGGTCTCCAAAACCGCCGGTTGCAGGTTCGAGTCCTG 649 ||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| Sbjct 39124 TAGCTCAATTGGTAGAGCAACGGTCTCCAAAACCGTAGGTTGCAGGTTCAAGTCCTG 39068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200486734332430