Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028956.1 Length=52139 Score E Sequences producing significant alignments: (Bits) Value seq811 187 8e-43 seq2315 156 1e-33 seq2422 123 8e-24 >seq811 Length=1020237 Score = 187 bits (206), Expect = 8e-43 Identities = 295/420 (70%), Gaps = 2/420 (0%) Strand=Plus/Plus Query 40880 TATAAATTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACC 40939 |||| |||||||| ||||| | | |||| | || | | || ||| |||| |||| Sbjct 997953 TATAGATTTTCTTTCTAAAGATGATATTGTAACACTCATCTTGCATAGTTCTATGAAACC 998012 Query 40940 GTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCAT 40999 ||| || || ||||| ||||| ||| || |||| ||| | | ||| || |||| | Sbjct 998013 TTTCACATATGCCATTAGTCTGTGGAGAGTTGGCTTTAGTTCTAGAATGATCAATGTTTT 998072 Query 41000 TTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTC 41059 ||| | |||||||||| |||| |||||||||| |||||||||||| || | || | Sbjct 998073 CTATTCCCAAATAAAGCTGATAAGCGTGATTTTCGGGCTTGCCACAATACTCCGTACCCC 998132 Query 41060 GGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCT-TTCAAAGTATGGTAACACTTTA 41118 |||||||| |||||||| | || || | ||| ||||| |||| | ||| || Sbjct 998133 TATCAGTTAAAATGCGTAATAATGG-AATTTTCTGCTCATCAAAAAATGGAATGACTCTA 998191 Query 41119 TCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCC 41178 || || || | ||| ||||| | ||||| || | || |||||||| | | || Sbjct 998192 TCGTTGAGAAGATCTGCAGCTGTAATAGCTGTTCTGTCCGTGTAAAGTTTAACCATTGCA 998251 Query 41179 ACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTG 41238 | | || |||||||| | ||| ||||| |||||||| | || | ||||||| ||| Sbjct 998252 AGTCTAGAATAAGTATCGACAAAAGTTTGCTGATAAATTCACCCTATACCTTTGATATTG 998311 Query 41239 CCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCA 41298 | |||||| | |||||||| || || | ||| || || ||| ||| |||||||||||| Sbjct 998312 CGCACATAATAGGTATCTTGAGAACCCAAATAACCTGGATGTTGCGTCTCAATTTCACCA 998371 >seq2315 Length=89380 Score = 156 bits (172), Expect = 1e-33 Identities = 498/759 (66%), Gaps = 29/759 (4%) Strand=Plus/Plus Query 40771 AAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTA 40830 ||| |||| || || ||| ||||| | || ||||||| || || ||||| | ||| Sbjct 75307 AAGTTTGC-ATAGGAGTTTTGCCATAACAATATTTTCCTGAATATGGTCGATCATTATTG 75365 Query 40831 TAATACATTAACCACTCATCTAAATCCGC----TTGTAATGTCGTTAA-ATCCGTATAAA 40885 ||| | |||||| ||| | ||| | |||||| || | || ||| ||||||| Sbjct 75366 AAATGCTCTAACCAAATATCAAGATCTACGTAATTGTAAA-TCATCAAGATCTGTATAAA 75424 Query 40886 TTTTCTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGC 40945 | || |||| | || | | ||||||| | || ||||||| || || || | Sbjct 75425 TCTTTTTCCGCATCGCTGTGTCAAAGAATTCTTTTTTCATCGTTTTATTAAAACGCTCAC 75484 Query 40946 AGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCG 41005 | |||||||| || |||||| | | || ||||| ||||| ||||| | | ||| | Sbjct 75485 ACATACCATTTGTTTGGGGAGCATATGCCTTTGTTTTAGTATGTTCTATACCTTCTAT-G 75543 Query 41006 CT---AAATAAAGCTCATAATCGTGATTTTCTACCTTGCCACAATATTC--ACTTCCTCG 41060 || |||||| |||| || | |||| |||| ||||| |||||| ||| | || Sbjct 75544 CTCAGAAATAA--CTCAAAAGCATGATGCTCTAAATTGCCCTTATATTCTGACT--CACG 75599 Query 41061 GTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATC 41120 || || | || || | || ||| |||||||| ||| | ||||||||||| ||| Sbjct 75600 ATCTGTAAGAATACGCAGTATTAGTATCCCTTGGCTCTCATACCATGGTAACACTCGATC 75659 Query 41121 ATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 41180 ||| |||||||| |||||| | || || || || ||||| ||||| ||| ||| || Sbjct 75660 ATTAAGCATATCAGCAGCAGTAATTGCTGTTTTATCAGTATATAGTTTAGCATCCGCTAC 75719 Query 41181 TTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCCACTCCTTTGAGGTTGCC 41240 || | || |||||||||| || ||||| ||| | ||||| | || || Sbjct 75720 CCTAGTATAGCTATCAATAAATACCTGAGAATAAACCTTACCTATACCTTTAAAATTACC 75779 Query 41241 CACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACCGTTTCAATTTCACCACA 41300 ||||| | ||||| || | || | ||| || || || ||| |||||||| ||| Sbjct 75780 TACATAATACGTATCCTGACATCCTATATAACCTGGATGCTGCGTCTCAATTTCTCCATG 75839 Query 41301 GGCAATCTCATCTTCTTTCTTACG---CTCTAAGGCTTGTACCTGTGTTTCACTGAGTAT 41357 || || | ||| || ||| ||||| |||||| ||| | |||| | || | Sbjct 75840 TGC---TTCTTTTTCATTACGACGCTTCTCTAGTACTTGTAACTGAGCTTCAGTAAGAAC 75896 Query 41358 AATACCTTGTTCTGCAACCAGTTT---TTCCAGGGCGATTAATCTTTGCTTAAAATTGGC 41414 ||| || ||||| | ||| || ||| | || || | |||| | | |||| Sbjct 75897 AATCCC--ATTCTG-AGCCATCTTTGCTTCTAATGCTATAAGCCTTTTACTGATATTGTT 75953 Query 41415 AAGATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAACAAAGATGCCTTGTTT 41474 | || || |||||||||||| || | || ||||| | ||| |||| || || ||| Sbjct 75954 TAAATCATTACGTAACCAAATTGATCTCACTCCTCCAGGTGATACAAGTATTCCGCTTTT 76013 Query 41475 ACGGAGTTCGTTACTCACTCTTACCTGTCCAAATGCCGG 41513 || || || ||||||| ||| ||| |||| || Sbjct 76014 CTTAAGCTCATTTGATACTCTTAGCTGACCATATGCTGG 76052 >seq2422 Length=64058 Score = 123 bits (136), Expect = 8e-24 Identities = 279/412 (68%), Gaps = 7/412 (2%) Strand=Plus/Minus Query 40771 AAGGTTGCCATCGGTGTTCTGCCACAGCACATTTTTCCTTGATGTGTTCGATGGTGATTA 40830 ||| |||| || || ||| ||||| | || ||||||| ||||| || | | ||| Sbjct 47098 AAGTTTGC-ATAGGAGTTTTGCCATAACAATATTTTCCTGAATGTGGCCGCTCATTATTG 47040 Query 40831 TAATACATTAACCACTCATCTAAATCCGCTTGTAATGTCGTTAA-ATCCGTATAAATTTT 40889 ||| | |||||| ||| | ||| |||||| || | || ||| |||||||| || Sbjct 47039 AAATGC--TAACCAAATATCAAGATCTAATTGTAAA-TCATCAAGATCTGTATAAATCTT 46983 Query 40890 CTTCCTAAATGCCACTTGGTAAAATTCTTGTAAGATTGTTTTATGGAACCGTTCGCAGAT 40949 |||| | || | | ||||||||| || ||||||| || || || || || Sbjct 46982 TTTCCGCATCGCTGTGTCAAAGAATTCTTGTTTCATGGTTTTATTAAAACGCTCACACAT 46923 Query 40950 ACCATTCGTCTGGGGATGCTTCACTTTCGTTTTCGTATGCTCTATGTCATTTATCGCTAA 41009 |||||| || |||||| | | || ||||| ||||| ||||| | | || ||| | Sbjct 46922 ACCATTTGTTTGGGGAGAATATGCCTTTGTTTTAGTATGTTCTATACCTTCCAT-GCTCA 46864 Query 41010 ATAA-AGCTCATAATCGTGATTTTCTACCTTGCCACAATATTCACTTCCTCGGTCAGTTA 41068 || |||||| || | |||| | || ||||| |||||| || || || || | Sbjct 46863 GAAATAGCTCAAAAGCATGATGCTGTATATTGCCCTTATATTCTGACCCACGATCTGTAA 46804 Query 41069 ATATGCGTAACATCGGTAAACCTTGGCTTTCAAAGTATGGTAACACTTTATCATTCAGCA 41128 || || | || |||| |||||||| ||| | ||||||||||| |||||| |||| Sbjct 46803 GAATACGCAGTATTGGTATCCCTTGGCTCTCATACCATGGTAACACTCGATCATTAAGCA 46744 Query 41129 TATCCGCAGCACTGATAGCGGTCTTCATTGTATAAAGTTTTGCAAACGCCAC 41180 |||| |||||| | || || || || ||||| ||||| ||| ||| || Sbjct 46743 TATCAGCAGCAGTAATTGCTGTTTTATCAGTATATAGTTTAGCATCCGCTAC 46692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166601697341940