Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq13874 268 3e-67 seq20448 206 9e-49 >seq13874 Length=14992 Score = 268 bits (296), Expect = 3e-67 Identities = 480/695 (69%), Gaps = 16/695 (2%) Strand=Plus/Minus Query 39070 CGGGTAGTCGAACTGCGTGATCGTTACGCCGTCCGCAGGCCGCACCCACGTCGGGATGTG 39129 ||||||||| || ||||| | |||||||| || ||| |||| ||| ||| Sbjct 10864 CGGGTAGTCCCACCCGGTGATGATGGCGCCGTCCTGCGGACGCTTCCACACCGGAATGGC 10805 Query 39130 ATCGACCAGCGGCTCGTCGGACATGATCACACCGGCTGCGTGCACGCCCATCTGCCGGAC 39189 ||| ||||||||| ||||||||| || || || || |||||| | |||| Sbjct 10804 GTCGGTGAGCGGCTCGGAGGACATGATGACCGCGCAGGCATGGACGCCCGCGTTGCGGAT 10745 Query 39190 GAGACCTTCGAGGCCACGCGCGAGGTCAATGACCTCCTTCGCGTCCTTGTCGTTCTCGTA 39249 ||||| |||||||| || ||| ||| || || ||||| || | |||| Sbjct 10744 CAGACCCTCGAGGCCCCGAGCGGTGTCGTAGATCTTGGCGACGTCCGGGTTGGACTCGAT 10685 Query 39250 CAGCGCCCGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGGTGATGCCCTC 39309 |||| |||| |||| | || || | ||| ||| |||| |||| ||||||||| | Sbjct 10684 GAGCGAGCGGACCTCGGCGGCTTCCTTGTACCGCTCGTGCGTGGGGTCGGTGATGCCGGC 10625 Query 39310 CAGGGGCATCGACGCGCCCATCACATCGGCCG-GGTA-CGCCTTGGTCAGCTTCTCGCCG 39367 | | || | | |||| | | ||| | || | ||||||||| | || ||| || Sbjct 10624 GACCGAGATGTCCTTGGCCATGA--TGGGCGGCGGCAGCGCCTTGGTGATCTGGTCGGCG 10567 Query 39368 ACCTGAAAG---GGCTTGTCCA---GCACGCGGGCCGCGTCCTTCAT---CGCGTTGCGG 39418 | ||| |||| | | | |||||||||| | |||||| || ||| ||| Sbjct 10566 ATGGCGAAGCCGGGCTGGCCGAACTGCACGCGGGCGGAGTCCTTGATGGCCGCCTTG--- 10510 Query 39419 GCCTTGATCCTGCCGTACGTCGCGATCTGTGCGACCTTGTCGCTGCCGTACTTCTCGGTG 39478 | |||||| ||||| |||| | ||| || ||| ||||||||| ||||||||||| Sbjct 10509 GTCTTGATGGTGCCGAACGTGATCACCTGGGCCACCCGGTCGCTGCCCCACTTCTCGGTG 10450 Query 39479 ACGTACCGGATCACGTCGCCACGGCGACGGTCATCGAAGTCGATGTCCACGTCGGGCATG 39538 |||| || | || ||||| ||||| || || |||||||||||||| | ||||||||| Sbjct 10449 GCGTAGCGCACCATCTCGCCGCGGCGGCGATCGTCGAAGTCGATGTCGATGTCGGGCATC 10390 Query 39539 GAGACGCGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGG 39598 || |||||||| ||||| ||||| |||||||||| || ||||| |||| ||||| | | Sbjct 10389 GACACGCGCTCGGGGTTGAGGAAGCGCTCGAAGAGCAGTCCGTGCGGGAGCGGGTCGATG 10330 Query 39599 TCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCACGCCCAGGGCCG 39658 | |||||| || | ||||| || | || || || || || || ||||| || || ||| Sbjct 10329 TTGGTGATGCCCATCGCGTAGGCCACGAGGGACCCGGCGGCCGATCCACGACCCGGTCCG 10270 Query 39659 ACCCACACACCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGAC 39718 || | | |||| ||| ||| ||||| ||| |||| ||||||||||| | | Sbjct 10269 ACGCGGATACCGACCTCGCGCGCGTGCTTGATGAGGTCCCCGACCACGAGGAAGTAGGCC 10210 Query 39719 GGGAACCCCATCTGGTTGATCATGTCGATCTCGTA 39753 ||||| ||||||| | ||| | | |||||||||| Sbjct 10209 GGGAAGCCCATCTCGAGGATGACGGCGATCTCGTA 10175 >seq20448 Length=9219 Score = 206 bits (228), Expect = 9e-49 Identities = 290/407 (71%), Gaps = 0/407 (0%) Strand=Plus/Minus Query 40368 CGTCCATGCGCGGGTACTTCCCGAGCAGACCCTCGCTGTACGAGCGAGAGGAGAGCTTGA 40427 |||||||||||| |||| || ||| | |||||| || ||| | | || || ||||||| Sbjct 485 CGTCCATGCGCGCCCACTTGCCCAGCTGCCCCTCGATGGACGCGAGCGACGACAGCTTGA 426 Query 40428 ACAGGTTGTGCAGGCCGGTCTTGTTCGTCGCGAGCATGGTCATGTGGGTGTAGGCACCCC 40487 ||||||| |||| ||||| |||| ||||| |||||||||||| ||||| || || | Sbjct 425 ACAGGTTCCGCAGACCGGTGGCGTTCTCCGCGACCATGGTCATGTGCGTGTACGCGCCGC 366 Query 40488 GACCGCTCACGTCGTACCGCTTCTGCTCGGGCGTGCCCCACTGGACCCGCTCCTGGTCGG 40547 || |||||||| | |||||| | | ||||||| | || |||| || |||| Sbjct 365 TGCCCGACACGTCGTCCGACTTCTGACTGCGATCGCCCCACAGCACGCGCTTCTTGTCGA 306 Query 40548 AGCGCGAGCCCGGCGCGACGTACGCCTCGATCCCGATGATGGGCTTGACCCCAGCGGCCT 40607 ||||||| ||||||||| ||||||||||||||||||||| ||||||| || || || Sbjct 305 AGCGCGACTCCGGCGCGATGTACGCCTCGATCCCGATGATCGGCTTGATGCCGGCCTTCT 246 Query 40608 GCCCCTGCGTGAAGAAGTCGTACGCACCGTGCAGGTTGCCGTGGTCGGTCATCGCGAGGG 40667 ||| || |||| ||| || |||| || |||||||||||||||||| | | | Sbjct 245 TGGCCTCGTTGTAGAACTCGCTGGCCCCGTACATGTTGCCGTGGTCGGTCATTCCCACCG 186 Query 40668 CCTTCATGCCCTGCGCCTTGGCCTCGGCGAACATGTCCTTCAGTCGAGCCGCCCCGTCGA 40727 | |||| || | || ||||| ||||||| | | || || ||||| | Sbjct 185 CGCTCATCCCGAGGCGCTGCGCCTCCGCGAACAGCGGCGCGATCTTCGCGGCGCCGTCCA 126 Query 40728 GAAGGCTGTACTCGGAGTGGACATGCAGGTGGACGAAGTCCTTCACG 40774 | | | |||||||| ||| || || || ||||||||| |||| Sbjct 125 GCATGGAGTACTCGGTGTGATTGTGGAGATGAACGAAGTCCGACACG 79 Score = 134 bits (148), Expect = 4e-27 Identities = 226/321 (70%), Gaps = 16/321 (5%) Strand=Plus/Minus Query 38270 ACGTCGGGCGGCAGGACCCGAAGGCCCA---TGCGCCTGCACTCGCCGAGGTA---CGTG 38323 |||||||||||||| || | || | |||| ||| ||| | ||||| || | Sbjct 3187 ACGTCGGGCGGCAGCACGGTGATCCCGAGCTTGCG---GCAGTCGGCCAGGTAGACCGCG 3131 Query 38324 GCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGG 38383 ||| |||| |||||||||||| || || ||||||| ||||||||||||| |||||| Sbjct 3130 GCC---TTGTCCTTGTCGTCGCCGACGGACGTGAGCAGACCCGCCATGTACTCCGCCGGG 3074 Query 38384 TAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCGCAGAGTGCGCC 38443 |||| | ||| || || | || | ||| | || ||| ||||| |||| | ||||| | Sbjct 3073 TAGTTGGCCTTGAGATAGCCGGTCCAGTACGAGACGAGCCCGTATCCCGCGGCGTGCGAC 3014 Query 38444 TTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCCGGATGGCAGCG 38503 |||||||| ||||| || ||||| || | || |||||||| ||| |||||| | Sbjct 3013 TTGTTGAACGCGTAGCCCGCGAACGGGAGGATGGTGTCCCACAGAGCCTTGATGGCGGGT 2954 Query 38504 TCCGAGTAGCCTCGCTCGCTTGC-TCCCTTCT-GGAAGTTCACGAACTCCTTGGCCAGCA 38561 || ||| || | | | | || | |||||| |||| | || | ||| | |||| Sbjct 2953 TCGGAGAAG--TTGTTGCCCAGCATGCCTTCTCGGAATCCCGCGTAGGCCTCCTCGAGCA 2896 Query 38562 CCTCGGGCTTCTTCTTGCCCA 38582 || | ||||||||||||||| Sbjct 2895 CCGAGAGCTTCTTCTTGCCCA 2875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160123222095500