Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq154 159 8e-34 seq1481 141 2e-28 seq679 84.2 5e-11 >seq154 Length=1683969 Score = 159 bits (176), Expect = 8e-34 Identities = 168/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| ||||| | ||| || || ||||| || ||||| || || || | ||||| Sbjct 578824 CGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGAGAGGGTA 578765 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||||||||| || |||||||| || || || ||||| || |||| |||| Sbjct 578764 CGGCCATCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCT 578705 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || || || ||||| || ||| ||||| |||||||| ||||| ||||| || | Sbjct 578704 TCTTTATCTTGGATTTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCTCAACTTCCAAT 578645 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| |||||||| || || ||||| || || | |||||| Sbjct 578644 GTGATGGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 578604 Score = 156 bits (172), Expect = 1e-32 Identities = 167/221 (76%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| ||||| | ||| || ||||||||||| |||||||| || || | || || Sbjct 579052 CGAAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTA 578993 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||||||||| || |||||||| || || || ||||| ||||||| |||| Sbjct 578992 CGGCCATCTTCCAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCT 578933 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || |||||||| || || || || || || ||||| ||||| || | Sbjct 578932 TCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCAGATGGCTCAACTTCCAAG 578873 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || || || || || | |||||| Sbjct 578872 GTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 578832 Score = 156 bits (172), Expect = 1e-32 Identities = 170/223 (76%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | ||||| | ||||| || || || || |||||||| || |||| |||||| Sbjct 580474 ACGAAGGCGAAGGACTAAATGAAGTGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGGGT 580415 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||||| || ||||||||||| || || ||||| ||||||| ||| Sbjct 580414 TCGGCCATCCTCAAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCC 580355 Query 211013 TTCCTTGTCCTGGATCTTTTG-TTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 |||||| | || || |||| | || || ||||| ||||| ||||| |||||||| | Sbjct 580354 TTCCTTAT-CTTGAACTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCAACCTCCA 580296 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || |||||||| || || ||||| || || | |||||| Sbjct 580295 AGGTAATTGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 580253 Score = 147 bits (162), Expect = 5e-30 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| ||||| | ||| || ||||||||||| |||||||| || || | ||||| Sbjct 580017 CGTAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTA 579958 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||| ||||| || |||||||| || || || ||||| ||||||| |||| Sbjct 579957 CGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCT 579898 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || || || || || || || || ||||| ||||| ||||| || | | Sbjct 579897 TCCTTATCTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAACTTCCAAA 579838 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | ||||| || || | |||||| Sbjct 579837 GTGATGGTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| ||||| | ||| || || ||||| || |||||||| || || | ||||| Sbjct 578596 CGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTA 578537 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||| ||||| || |||||||| || || || ||||| ||||||| |||| Sbjct 578536 CGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCT 578477 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || || ||||| || || || || ||||| || || ||||| || | | Sbjct 578476 TCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCTAAA 578417 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | ||||| || || | |||||| Sbjct 578416 GTGATAGTTTTACCAGTCAATGTCTTCACGAAGATCTGCAT 578376 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| ||||| | ||| || || ||||| || |||||||| || || | ||||| Sbjct 579789 CGCAGTCGCAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTA 579730 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | |||||||||||||| || || |||||||| || || || ||||| ||||||| |||| Sbjct 579729 CGGCCATCTTCCAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCT 579670 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || |||||||| || || || || || || || || ||||| || | Sbjct 579669 TCCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCGGATGGCTCAACTTCCAAG 579610 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || || || || || | |||||| Sbjct 579609 GTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 579569 Score = 138 bits (152), Expect = 3e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| ||||| | ||| || || ||||| || |||||||| || || | ||||| Sbjct 580245 CGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTA 580186 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||||||||| || ||||||||||| || || || || || |||| |||| Sbjct 580185 CGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGGGGGAATTCCT 580126 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||| || || ||||| || || || || ||||| || || ||||| || | | Sbjct 580125 TCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAAA 580066 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || || || || | ||||| || || | |||||| Sbjct 580065 GTGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCAT 580025 Score = 113 bits (124), Expect = 1e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| ||||| | ||| || || ||||| || |||||||| || || | ||||| Sbjct 578368 CGTAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTA 578309 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||||||||||||||| || ||||||||||| || || ||||| ||||||| |||| Sbjct 578308 CGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCCT 578249 Query 211014 TCCTT 211018 ||||| Sbjct 578248 TCCTT 578244 >seq1481 Length=432034 Score = 141 bits (156), Expect = 2e-28 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| || || || |||| | || | |||||||| | |||||| || || |||| Sbjct 233765 CTTTTTGAATATTGTAGTCCGACAACGTTCGGCCATCTTCTAACTGCTTCCCGGCAAAGA 233824 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 | ||||| || || |||||||||| ||||||||||| || ||||| || || || | Sbjct 233825 TCAGGCGCTGCTGATCAGGAGGAATCCCTTCCTTGTCTTGAATCTTCGCCTTAACATTCT 233884 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 |||| ||||||||| || ||||| | || ||||| ||||| ||||| |||||||||| Sbjct 233885 CGATCGTGTCAGAGGGCTCTACCTCCAACGTAATCGTTTTTCCTGTGAGCGTCTTTACAA 233944 Query 211105 ACACCTGCATTTT 211117 | | |||||| || Sbjct 233945 AAATCTGCATGTT 233957 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || ||||||||||| |||||||| ||||| ||||| ||||| | ||| || | |||||| Sbjct 222111 AGCACAAGGTGAAGTGTGGACTCCTTTTGAATGTTGTAATCAGAAAGTGTGCGACCATCT 222170 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||| || ||||| || || | | || ||||| || || | |||||| ||||| Sbjct 222171 TCCAACTGTTTTCCTGCAAAAATCAATCTCTGCTGGTCTGGGGGGATTCCTTCTTTGTCT 222230 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGA 211057 |||||||| ||||||||||| || || ||||| Sbjct 222231 TGGATCTTAGCCTTCACGTTTTCAATTGTATCAGA 222265 >seq679 Length=971210 Score = 84.2 bits (92), Expect = 5e-11 Identities = 115/161 (71%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 ||||||||||| || ||||| |||||||| | |||| |||| ||| ||||| |||||| Sbjct 842571 GGAAGAGGAGGTCAGTCTGCACTGCGTTTCGCTCGACTACGAATGGAGAAGAGACACAAC 842630 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTATCAAAGACAACAAGTGTTTT 139941 || |||||||||| || ||| || | |||| ||||||| || | || | Sbjct 842631 TATGTGAGAAAAGTAGCGGAGGTGGCTACACAGCTGTTTATCACCAACGATAAACCCAAT 842690 Query 139942 GTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGAC 139982 || | ||| || | ||||| ||| ||||| ||||| || Sbjct 842691 ATTGCCGGTCTTATCTTGGCTGGTAGTGCAGACTTCAAAAC 842731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158240555160050