Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq154 102 6e-17 seq1475 87.8 1e-12 seq1481 86.0 4e-12 >seq154 Length=1683969 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || |||||||| ||||| | |||||||| | | Sbjct 578832 ATGCAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGAGCCATCT 578891 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| |||| | || | | || || ||||| | || ||||| || Sbjct 578892 GATACTATTGAGAATGTTAAGGCCAAGA-TCCAAGATAAGGAAGGAATTCCTCCAGACCA 578950 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || || || || |||||||| | || ||| | || ||||| Sbjct 578951 GCAGCGACTCATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACTCTGTCTGACTACAA 579010 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 579011 CATCCAGAAAGAGTCCAC 579028 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || || | || || ||||| |||||| | |||||||| | | Sbjct 579797 ATGCAGATTTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCT 579856 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | || | |||| || || || ||||| | || ||||| || Sbjct 579857 GATACCATTGAGAATGTCAAGGCCAAAA-TTCAAGATAAGGAAGGAATTCCTCCAGACCA 579915 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || || || || || ||||||||||| | || || | || ||||| Sbjct 579916 GCAGCGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTGTCTGACTACAA 579975 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 579976 CATCCAGAAAGAGTCCAC 579993 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||||| || ||||| || ||||| | |||||||| | | Sbjct 578604 ATGCAGATTTTCGTGAAGACCCTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCT 578663 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | || | ||||| ||||| || |||||||| | || ||||| || Sbjct 578664 GATACCATCGAGAACGTAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGACCAG 578723 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || || |||||||| | || || | ||| ||||| Sbjct 578724 CAGCGACTCATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAAT 578783 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 578784 ATCCAGAAGGAGTCAAC 578800 >seq1475 Length=480095 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| ||||| || |||||||||||||| ||||| || || || || || || | Sbjct 62845 AACATGCAAATTTTTGTGAAAACCCTCACGGGTAAAACCATTACCCTTGAGGTCGAGCCA 62786 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||||| | || ||| || || || || || | || ||||| Sbjct 62785 TCAGACACTATTGAAAATGTCAAGGCAAAGATACAGGATAAGGAGGGAATCCCCCCAGAC 62726 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || |||||||| ||||| | ||||| | || ||| | || ||| Sbjct 62725 CAGCAGCGACTGATTTTTGCCGGTAAACAGTTAGAAGATGGGCGTACTCTCTCTGACTAC 62666 Query 23788 AACATACAAAAAG 23800 || ||||| |||| Sbjct 62665 AATATACAGAAAG 62653 >seq1481 Length=432034 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || || ||||| ||||||||||| || | || || || || Sbjct 233957 AACATGCAGATTTTTGTAAAGACGCTCACAGGAAAAACGATTACGTTGGAGGTAGAGCCC 233898 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| |||| | || ||| ||||| ||||| | || || || Sbjct 233897 TCTGACACGATCGAGAATGTTAAGGC-GAAGATTCAAGACAAGGAAGGGATTCCTCCTGA 233839 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| ||||| | || |||||||| || || | ||||| | || || || || || Sbjct 233838 TCAGCAGCGCCTGATCTTTGCCGGGAAGCAGTTAGAAGATGGCCGAACGTTGTCGGACTA 233779 Query 23787 CAACATACAAAAAG 23800 ||| || ||||||| Sbjct 233778 CAATATTCAAAAAG 233765 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337756786775960