Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_030696.1 Length=93139 Score E Sequences producing significant alignments: (Bits) Value seq49429 219 3e-52 seq19136 120 2e-22 >seq49429 Length=1101 Score = 219 bits (242), Expect = 3e-52 Identities = 226/296 (76%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 71981 CCGAACTGCGCTTCACCCCCTCGGGCGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCC 72040 ||||||| || ||||||||| | || ||| ||||||| |||||||||||||| ||| | Sbjct 1 CCGAACTTCGATTCACCCCCGCCGGTGCGGCGGTCGCGAACTTCACCGTCGCGTCCACTC 60 Query 72041 CGCGGTACTTCGACAAGCAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCT 72100 | || |||||| ||| |||||||||||||||||| ||| ||||| ||||| |||| Sbjct 61 CCCGCACCTTCGATCGCCAGACCAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCGCT 120 Query 72101 GCAACATCTGGCGCGAGCCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCG 72160 ||||||||||||| ||| | || ||||||||| ||||||| ||| | ||| || | Sbjct 121 GCAACATCTGGCGTGAGGCAGCGGAGAACGTCGCCGAGTCCCTGACTCGCGGCGCACGGG 180 Query 72161 TCATCGTCCAGGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGA 72220 | ||||| ||| || ||| |||||| || ||||||| || || ||||| || | Sbjct 181 TGGTCGTCACGGGCCGGCTCCGGCAGCGTTCCTTCGAGACGCGTGAGGGTGAGAAGCGCA 240 Query 72221 CGGTCATCGAGCTCGAGGTCGAGGAGATCGGCCCCGCACTGCGGTACGCCACCGCC 72276 | ||| |||| ||||||||||| ||| ||||||| | || || ||||| || ||| Sbjct 241 CTGTCGTCGAACTCGAGGTCGACGAGGTCGGCCCTTCGCTCCGCTACGCGACGGCC 296 >seq19136 Length=6680 Score = 120 bits (132), Expect = 2e-22 Identities = 256/375 (68%), Gaps = 17/375 (5%) Strand=Plus/Plus Query 42833 GCGAGGCGAAGCTGGAGGCCGAGGGCCTCTTCCATCCACGCCACAAGCAGGCGCTCCCGC 42892 ||| ||| | ||| | ||| |||||||| ||| ||||||||| ||||| | | ||| Sbjct 610 GCGCGGC-ATGCTCGCGGCGGAGGGCCTGTTCGATCCACGCCTCAAGCGCCCCTTGCCGT 668 Query 42893 GTGTTCCGAAGTGCA-TCGGCCTGATCACCGCACCGAATAGCGACGCGGAGAAGGACGTG 42951 | ||| | || |||| ||| ||||||||| |||| ||| |||||||||||| Sbjct 669 -TCCTCCCCCGCGCCGTCGGACTGGTCACCGCACGTGCGAGCGCCGCCGAGAAGGACGTG 727 Query 42952 CTCAGCGTCGCGCGAGGACGGTGGTCGAGCGTCAGCTTCAAGCTGTCCCACATCAACGTC 43011 || ||||| ||| |||||||| || ||| | ||| || |||| |||| | Sbjct 728 CTGTCGGTCGCCCGACGACGGTGGCCGGCCGTGCGGTTCGAG--GTCCG----CAACACC 781 Query 43012 CAGGGGCAGCGCTGCGCCGGCGCGGC---GAA----GCGAGCCATCGAGGAGTTCGACGC 43064 | || |||| || || ||||| || | | ||| || |||| || |||||| Sbjct 782 CCGGTGCAGGGCC-CGTCGGCGGTGCCCGGCATCCTGCGTGCGATCGCCGAACTCGACGA 840 Query 43065 GGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAGACCTCCT 43124 | | || | ||| ||||| ||| | || || |||||||||||| ||| || || || Sbjct 841 GCATCCCGACGTCGACGTGATCGTTCTCGCGCGCGGCGGCGGCAGCGTGGAGGATCTTCT 900 Query 43125 CCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACCCCGGTTGTGTC 43184 ||||| |||||||| ||||| |||||||| ||||| | ||| ||| | || Sbjct 901 CCCGTTCTCCGACGAAGCTCTCTGTCGCGCCGTCGTCGCGGCCCGAACGCCGATCGTCAG 960 Query 43185 TGCGATTGGCCACGA 43199 ||||| || ||||| Sbjct 961 CGCGATCGGTCACGA 975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 297697171667000