Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_030907.1 Length=17562 Score E Sequences producing significant alignments: (Bits) Value seq6786 131 2e-26 >seq6786 Length=20090 Score = 131 bits (144), Expect = 2e-26 Identities = 273/404 (68%), Gaps = 2/404 (0%) Strand=Plus/Plus Query 8286 CCTCGGCGGTGTCCTCGGCGCGATCACCCCGCAAATGCAGCGGGTAG-GCGGCGCGATCA 8344 |||||| | | |||| ||| | |||||||| ||| |||||| |||| ||| | Sbjct 11953 CCTCGGTGACGCTCTCGACGCCGTGACCCCGCAGATGGGTGGGGTAGCGCGG-GCGGTGT 12011 Query 8345 CCGGCGTGTTCAATCGCGCCGCCGGAACCATCGCCAAGAACACCGGCGGCCTGCAACAGC 8404 | || |||||| || ||||| |||||| || ||| | | |||| | | || Sbjct 12012 CGGGGGTGTTCTCCGGCCTCGCCGCCACCATCAAGAAAAACGCGGACGGCATCGGCCGGC 12071 Query 8405 TCGCATCCAAGGGCGCAGAGTTCGTCACCCGCCTCGGCCCCGGCCTCGACACGATCATCA 8464 | || |||| ||| ||||||||| |||| |||||||||||||| |||| | || Sbjct 12072 TGGCCGACAAGTCCGCCGAGTTCGTCTCCCGACTCGGCCCCGGCCTGAACACCCTGGTCG 12131 Query 8465 CCAAGCTGATTCAGTTCGGCGCATCGATCAACGTCGACTCCATATTCGCGCTGTTCACTC 8524 ||| |||| ||||||||| || ||| |||||||| | ||| || |||| | | Sbjct 12132 AGAAGATGATCGCGTTCGGCGCGTCCATCGACGTCGACAAACTGTTCTCGGCGTTCGCCC 12191 Query 8525 AGCTCGGCACGCTCCTCAAGCCGATCGCCGACCTGTTCGTCCAGCTGTCGGCCGCCGCCG 8584 | |||| || || || |||| |||||||||||||||||| | | ||| |||| Sbjct 12192 GGGTCGGTGATCTGGTCCGCCCCATCGTCGACCTGTTCGTCCAGCTCGCCGGCGCGGCCG 12251 Query 8585 GACCGTTCGGCGGGATGCTCGGCATCATCGGCGCAGCGATCACCGCACTGACACCCGCGC 8644 | || ||||||| ||| || | ||||| | ||||||| | || || |||| Sbjct 12252 GCCCCCTCGGCGGTGGGCTGACCAACCTCGGCAACGTCGTCACCGCCATCACCCCGGCGC 12311 Query 8645 TCGTCCAGATCGCGCAGACCCTCGGTCCCGTCCTCGCCGAGTCC 8688 | || ||||| |||| |||| || ||||| ||||| || Sbjct 12312 TGGTGTCCATCGCCGAGACGGTCGGCCCTGTCCTGTCCGAGGCC 12355 Score = 118 bits (130), Expect = 1e-22 Identities = 139/180 (77%), Gaps = 6/180 (3%) Strand=Plus/Plus Query 17128 TACGGCCGCGTGTGCCATCTGTGCGGCCGCCCTGGCGCGTCCACGGCCGATCACGTCATC 17187 ||||||||| ||||| ||||||||||| || || || |||| ||||| ||| ||||| Sbjct 19569 TACGGCCGCCGCTGCCACCTGTGCGGCCGGCCAGGTGCCACCACCGCCGACCACCTCATC 19628 Query 17188 CCTCGC-TCACGAGGCGGCCGCGACGCTCTGGACAACCTCAGACCGGCGCACCTGTCCTG 17246 || ||| || | ||||||| |||| | || ||||||||| | || ||||||||||| || Sbjct 19629 CCCCGCAACAAG-GGCGGCCCCGACACCCTCGACAACCTCCGGCCCGCGCACCTGTCATG 19687 Query 17247 CAATCAGAGC-CGAGGTGACATGACCCTCGACGAGTGGTTCGCGTC-CCACCCTCTGCCC 17304 ||| ||| || || |||||| ||| | |||||||||| || | ||||| |||||| Sbjct 19688 CAA-CAGCGCACGGCAGGACATGGACCTGGCCGAGTGGTTC-CGCCGGCACCCGCTGCCC 19745 Score = 116 bits (128), Expect = 4e-22 Identities = 144/194 (74%), Gaps = 10/194 (5%) Strand=Plus/Plus Query 6953 CAGGACATCGAGAAGGACGGCCTCATCGACTGGTCCTGGTCGAACCCCGGCAAAGAGGTG 7012 |||||| | || | |||| |||||||||||| | ||| |||| ||||| ||||||| Sbjct 10210 CAGGACCTGGAAGCGAACGGGCTCATCGACTGGACGTGGAAGAACGCCGGCGCAGAGGTG 10269 Query 7013 CCGTTCACGTTCACGCC---CAAGAACGGCGAAGTCGCCACCGTCACCGGCAAGGTCATC 7069 ||||||||||| || || | |||||| | || ||| ||||| ||||| Sbjct 10270 GGGTTCACGTTCATCCCGGACACCACCGGCGAGG---CCCGCGTGCGCGGCACCGTCATG 10326 Query 7070 GTCGACCCGGTCGAGTTCGGCGGCGATGTCAAGAAGCGGAACATCAG--CGAGTTCGAGT 7127 |||||||| |||| |||| ||||| ||||||||||| ||| ||| ||||||||||| Sbjct 10327 GTCGACCCCATCGACCTCGGTGGCGACGTCAAGAAGCGCAAC--CAGTCCGAGTTCGAGT 10384 Query 7128 GGGACATCGTCGGC 7141 || ||||| |||| Sbjct 10385 GGAACATCACCGGC 10398 Score = 111 bits (122), Expect = 2e-20 Identities = 259/387 (67%), Gaps = 8/387 (2%) Strand=Plus/Plus Query 5231 CACGCTCAGCTCGCCGACATCACCGCATCCGGCCTCATCGACG-CGACGCCGCCCGCATG 5289 ||||| |||| ||||| ||||||| || || | ||||| || ||| ||||| || Sbjct 8482 CACGCCGAGCTGGCCGATATCACCGTCGCCAACCAGACCGACGTCGCCGCA-CCCGCGTG 8540 Query 5290 GCTCGGCGAACTGTGGTCGGGACCGGCGAAGACTCGCGAACTGATCCCGCTGTTGAAGCG 5349 |||||| || |||||||| || ||| | ||| | ||||| ||| ||| Sbjct 8541 GCTCGGTGAGCTGTGGTCCGGCGTGGCCTACCAGCGCCGCATCATCCCCCTGCTGACCAC 8600 Query 5350 CCGCCCGCTCACGTCGTGGCGCATGCAAG---GGTTCCGGTGGAAGGACAAGCCGCTGGT 5406 ||| ||||| || |||||| | | | | ||| |||||| |||||| ||| Sbjct 8601 CCGGCCGCTGACCC---GGCGCAAGGCGGTCGGCTACCGCTGGAAGACCAAGCCCACGGT 8657 Query 5407 CGCCTCGTACGAGGGCGACAAGAAGGAGATCCCCACCAACCCCGTCAGCGTCGAGCCGTA 5466 || ||||| ||| |||||| || || || ||| ||| || ||| | | Sbjct 8658 CGAGAAGTACGCCGGCAACAAGACCGACATTCCGACCGGCCCGGTGGAGACCGAACAGGT 8717 Query 5467 CGAGTTCGAGGCTGTGCGCTGGGCGGGCGGTCACGACTTGGATCGGAAATTCTACGACTT 5526 ||| | ||| | ||| ||||| |||||||||||| | || || |||| |||||| Sbjct 8718 GGAGATGACGGCCGAGCGGTGGGCCGGCGGTCACGACATCGACCGCGCGTTCTTCGACTT 8777 Query 5527 CGGTGACTCGTCGATCCTTGAGGCGTACTGGGCCGCGATGCACGAAAGCTACGCCGTCGT 5586 | ||| | | |||| | || ||||||||||||||| |||| |||||||||| | Sbjct 8778 CAACGACACCGAGTTCCTGAACGCCTACTGGGCCGCGATGAACGAGAGCTACGCCGAGGA 8837 Query 5587 GACCGACCAGGCGGCCGGTGCGTTCCT 5613 |||||||| | |||| | |||||| Sbjct 8838 GACCGACCTCGACGCCGCCGAGTTCCT 8864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 56040206157750