Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq46235 86.0 2e-12 seq43099 86.0 2e-12 >seq46235 Length=1443 Score = 86.0 bits (94), Expect = 2e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 34071 CATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCGCGCAGGTCCGACATCATCGG 34130 ||| | || |||||||||||||||||||| || ||||||||||||||||||| | ||| Sbjct 1404 CATCACCATGTCGGCGTCCTGCTCGATCGAGCCCGACTCGCGCAGGTCCGACAGCTGCGG 1345 Query 34131 TCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGCGACAGCACGATCACGGGGAT 34190 ||||| | ||||||||| ||||| ||||| | | ||| |||||| Sbjct 1344 CGTCTTGTCGGTGCGCTGCTCCGAACCACGGTTCAGCTGGCTGATCGCGACGACGGGGCA 1285 Query 34191 ACCAAGCTCCATGGCCAGTAGCTTG 34215 | |||||| |||| || |||||| Sbjct 1284 GTCGAGCTCCTTGGCGAGCAGCTTG 1260 >seq43099 Length=1459 Score = 86.0 bits (94), Expect = 2e-12 Identities = 176/256 (69%), Gaps = 17/256 (7%) Strand=Plus/Minus Query 34090 TGCTCGATCGCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGC 34149 ||||||| | |||||||| || ||||| |||| |||||| ||||| | |||||| Sbjct 1459 TGCTCGAGGGAGCCGGACTCACGGAGGTCGGACACCATCGGCTTCTTGTCGGTGCGCTGC 1400 Query 34150 TCCAGGGAGC--GGTTGAGCTGCGACAGCACGATCACGGGGATACCA--AGCTCCATGGC 34205 || |||| | |||||||||| | | | | | ||||||| |||| || ||| |||| Sbjct 1399 TC--GGGACCACGGTTGAGCTGGCAGATCGCCACCACGGGG--ACCATGAGTTCCTTGGC 1344 Query 34206 CAGTAGCTTGCACTGGCGGGACATGTCGCTGACGTCCT--CGGTGCGAGTTGA----CTT 34259 ||| |||||| | || || | ||| ||| |||| || |||| | || ||| Sbjct 1343 CAGCAGCTTGAGCGAACGCGAGAAGTCCGAGACCTCCTGCTGGCGCGACTCGACCTTCTT 1284 Query 34260 GCCGGAGCTCTCCAGCAACTGCAGGTAGTCCACCACCAGCAGGCTCAACCCATGGCGCTG 34319 |||||| | || || |||||||||||| | || | ||| | | | || || || Sbjct 1283 GCCGGA---CGACATCAGCTGCAGGTAGTCGATGACGATCAGCTTGAGGTCGTGCCGTTG 1227 Query 34320 CTTGTGACGCCGGGCC 34335 |||| | || |||||| Sbjct 1226 CTTGAGCCGTCGGGCC 1211 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160347058851300