Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_030912.1 Length=17119 Score E Sequences producing significant alignments: (Bits) Value seq6786 149 7e-32 >seq6786 Length=20090 Score = 149 bits (164), Expect = 7e-32 Identities = 281/408 (69%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 5212 AGGTGGTGCACGCCGCGCTGTCGGACATCACCAACTCGGGTCTGACCGACGCCATCCCGC 5271 ||| | | ||||||| |||| | || |||||| | | | |||||||| | | | | Sbjct 8474 AGGAGATTCACGCCGAGCTGGCCGATATCACCGTCGCCAACCAGACCGACGTCGCCGCAC 8533 Query 5272 CCGCGTGGCTCGGGCAGCTGTGGTCGGGCCCGGCCAAGCAGCGCGAGCTCGTGCCGCTGC 5331 ||||||||||||| |||||||||| ||| |||| | |||||| || | || |||| Sbjct 8534 CCGCGTGGCTCGGTGAGCTGTGGTCCGGCGTGGCCTACCAGCGCCGCATCATCCCCCTGC 8593 Query 5332 T--CAATCAGAAGCCGCTGCGCTCGTGGCGTATGCAG--GGTTTCCGGTGGAAGGACAAG 5387 | | | | | ||||||| | || || | || | || | ||| |||||| |||| Sbjct 8594 TGACCACCCG--GCCGCTG-ACCCGGCGC-AAGGCGGTCGGCTACCGCTGGAAGACCAAG 8649 Query 5388 CCGCTGGTCGCCGCGTACACCGGCGACAAGACGGAGATTCCGTCGGGCCCGGTGTCGGTC 5447 || ||||| |||| ||||| ||||||| || |||||| | ||||||||| | | Sbjct 8650 CCCACGGTCGAGAAGTACGCCGGCAACAAGACCGACATTCCGACCGGCCCGGTGGAGACC 8709 Query 5448 GAGCCCTACGAGTCGGAGGCGACCCGGTGGGCTGGCGGCCACGACCTCGACCGCAAGTTC 5507 || | ||| | ||| |||||||| ||||| |||||| |||||||| |||| Sbjct 8710 GAACAGGTGGAGATGACGGCCGAGCGGTGGGCCGGCGGTCACGACATCGACCGCGCGTTC 8769 Query 5508 TGGGACTTCGGTGACGCGGGCATCCTGGCCGACTACTGGGCGATGATGAACGAGTCGTAC 5567 | |||||| ||| | | ||||| || ||||||||| |||||||||| ||| Sbjct 8770 TTCGACTTCAACGACACCGAGTTCCTGAACGCCTACTGGGCCGCGATGAACGAGAGCTAC 8829 Query 5568 GCCGTCGTCACCGACCAGGCGGCCGGTGCGTTCATCGTCGCCAACGCC 5615 |||| | ||||||| | |||| | |||| | | | |||||||| Sbjct 8830 GCCGAGGAGACCGACCTCGACGCCGCCGAGTTCCTGGACACCAACGCC 8877 Score = 140 bits (154), Expect = 4e-29 Identities = 471/727 (65%), Gaps = 38/727 (5%) Strand=Plus/Plus Query 2409 ACCGGCTCCGACCGGCCGCTGTGGCTCGACCGCACCGACGGCCCGGTCTCGCCGTATCAC 2468 |||||| | |||||| ||||||||||||||||| ||||||||||| || |||| || Sbjct 5233 ACCGGCGCACGCCGGCCCCTGTGGCTCGACCGCACGGACGGCCCGGTGTCCCCGTTCCAT 5292 Query 2469 CGGATGCTGTGGACCGTGGACGATCTGCTGTTCTACGGCTGGTCGCTGTGGGCGGTCGGC 2528 ||||||||| ||| ||||| ||| | ||| |||||| || ||||||||||| Sbjct 5293 CGGATGCTGCTCACCTGCGACGACCTGTTCTTCCACGGCTACTCCGCGTGGGCGGTCGAA 5352 Query 2529 CGCGACGGCAGCGGCCGCGTCATTGCCGCCGACCGCGTGCCCTACAGCGCGTGGCGCGTC 2588 ||||||||| |||| |||| | ||||||||||| | || | | | ||| | || Sbjct 5353 CGCGACGGCTCCGGCGTCGTCGTCGCCGCCGACCGAATCCCGTTCGAGGACTGGTCCATC 5412 Query 2589 GAT---CAGGGCCGCGTCGTGTACATCGGTGACCAGGGCATCGAAACCGTCGCCGAC-CC 2644 | | | ||||||||| ||||| || ||| |||| | |||| || Sbjct 5413 GGTGCGAACGGCCGCGTCCTGTAC--CG-------------CGAGACCGAGGTCGACGCC 5457 Query 2645 CGCGTCGATTGTGCTGATTCCCGGCTCAGACGAGGGACTGCTGCACGACTCATCGACCGC 2704 ||| ||| | | | || |||||| ||| || | ||| || | ||||||| | Sbjct 5458 CGC-TCGGTCATCGTCATCCCCGGCGAGTCCGAAGGCATCCTGAACTTCGGATCGACCCC 5516 Query 2705 CATCCGGCACGCGGCCGACCT-GCTGCACGCCGCCGCGACGNNNNNNNCGACCCCGTCGG 2763 ||||| ||||| |||||| || || |||| |||| | | |||| ||| | Sbjct 5517 GATCCGCCACGCCCGCGACCTCGCCGC-CGCCACCGCCAAGGCCGCCACGACACCGGCCA 5575 Query 2764 CGTACCTCGAGCTGCACCAGACCAACGATCTGCCGCTGTC---GGACAAGGACCGCACCG 2820 | || || ||| | |||||| | | || ||| | || |||| | || Sbjct 5576 CCAACGTCCTGCTCAAGCAGACCTCGGGTGACCCACTGACCCGCGAGAAGGCCAAGGCCA 5635 Query 2821 ACCTCATCGACT-CGTGGCGTAAGGCTCGGCTCGGCGAGAACGGCGGCGTGGCGTTCACG 2879 | | ||||| |||| | |||||| | || | || ||| ||| ||||| | Sbjct 5636 TCGTGGACGACTACGTGTC----GGCTCGCCGCGAGGCCGACCACGGGGTGTCGTTCGCC 5691 Query 2880 TCGGCCGGTGTCGAGGCGCGCGAGCTCGGCA----CGTTCTCCGAACACCTGCTGGTCGA 2935 |||||| |||| | |||| ||||| || | ||| |||| | |||| Sbjct 5692 TCGGCCAACATCGACGTCATCGAGGCCGGCAAACGCGAGC-CCG---CCCTGTTCATCGA 5747 Query 2936 GGGCCGCAACGCCGCCGCGCTCGACGTGGCTCGAGCCACCAATCTGCCCGGCTCGGTGCT 2995 ||||||||||||||||| |||| | || || ||| |||| | || |||| Sbjct 5748 CGGCCGCAACGCCGCCGCCGTCGATATCGCCCGCCTGACCGGCGTGCCGGCGTCCCTGCT 5807 Query 2996 CGACGCCACCACCGACAAGTCGTCGCTCACGTACGAGACGACCCGCGACAAGGCGCGCGA 3055 ||||||| ||||| | |||| | || ||| ||| ||| | ||| | || Sbjct 5808 CGACGCCGCCACCCCCGGCGGGTCGATGACCTACAAGAACACCGAGGCCAAAATCCAGGA 5867 Query 3056 CCTCATCGACTATGGGCTGTCCACCTACATGTCGCCCATCGCCGCCCGGCTCGGCATGGA 3115 || ||||||| | || || |||||||||| || | |||||||| ||||| ||||| Sbjct 5868 GCTGATCGACTTCGCCCTCGCCCCCTACATGTCCGCCGTGGCCGCCCGCCTCGGGATGGA 5927 Query 3116 CGACGTG 3122 |||| || Sbjct 5928 CGACATG 5934 Score = 109 bits (120), Expect = 6e-20 Identities = 121/156 (78%), Gaps = 4/156 (3%) Strand=Plus/Plus Query 16373 CGCGGCCACGCTCGAGGCGTACGGCACGACG-TGCCATCTGTGCGGCCGTCCCGGTGCCG 16431 ||| ||||| ||| | |||||| || || ||||| ||||||||||| || |||||| Sbjct 19550 CGCCGCCACCCTCCGCGTCTACGGC-CGCCGCTGCCACCTGTGCGGCCGGCCAGGTGCCA 19608 Query 16432 ACAGCGCCGATCACCTGATCCCTCGAGCGCTCGGCGGCCCCGACACGCTCGACAACCTCA 16491 || |||||| ||||| ||||| || |||||||||||||| |||||||||||| Sbjct 19609 CCACCGCCGACCACCTCATCCCCCGCAACAAGGGCGGCCCCGACACCCTCGACAACCTCC 19668 Query 16492 GACCGGCGCACCTGGCGTGCAATCAGCGGCGCGGCA 16527 | || ||||||||| | ||||| |||| || ||||| Sbjct 19669 GGCCCGCGCACCTGTCATGCAA-CAGC-GCACGGCA 19702 Score = 95.1 bits (104), Expect = 1e-15 Identities = 198/282 (70%), Gaps = 21/282 (7%) Strand=Plus/Plus Query 12771 GCATGGCCGAGCAGTTCCTGCACGGCCCGGATA--TCGCGGTCGGCCCGGTACGCCGCGC 12828 || |||||||| || || ||||| | || | | |||||| ||||||||| || | Sbjct 15618 GCGTGGCCGAGTAGGTCTTGCAC--CACGAACACGTCGCGGGTGGCCCGGTAGACCTTGG 15675 Query 12829 TCGCAAAGCGGTGGCGCAGCGTGTGAGTCGTCCACCCCGGCGGCAGCA-ACCGCGCAATC 12887 | | |||||||||||||||| ||| ||||| ||| |||||| | |||| | | Sbjct 15676 TGCCGAAGCGGTGGCGCAGCGCGTGCATCGTCACGCCCTCCGGCAGGAGGCCGC-CGACG 15734 Query 12888 AGCTTCCCGACATGAGCCGGTGTCAGGTGGCCGCCG--CGCGGCGATGGGAACGCGTACC 12945 | ||| ||||| || | ||||||||||||| |||| || |||||| ||||| Sbjct 15735 ATCTTGCCGACCCACCGAGGGGACAGGTGGCCGCCGGCCGCGCCG--GGGAACAGGTACC 15792 Query 12946 CGCGCCGC-TGCTCG-AGCTGC----TCGGCG---AGCTCGTCACTGATCGGCACCAGCC 12996 ||| |||| ||||| || || |||||| || | ||| ||| || | |||| Sbjct 15793 CGCCCCGCGAGCTCGCGGCCGCGACGTCGGCGGCCAGGTTGTCGGTGAGGGGGATGAGCC 15852 Query 12997 GCTCCCGGCCGCCCTTACCGAGCACGCGCAGC-TGCGCGCCG 13037 | | |||||||||||| ||| ||||||||| |||| |||| Sbjct 15853 GTTGCCGGCCGCCCTTGCCGGTGACGCGCAGCGTGCG-GCCG 15893 Score = 86.0 bits (94), Expect = 7e-13 Identities = 127/179 (71%), Gaps = 6/179 (3%) Strand=Plus/Plus Query 6903 CAGGACCTCGAGGAGAACGGACTGATTGACTGGACGTGGGCGAACGCGGGCAAAGAAGTC 6962 |||||||| || | |||||| || || |||||||||||| |||||| ||| ||| || Sbjct 10210 CAGGACCTGGAAGCGAACGGGCTCATCGACTGGACGTGGAAGAACGCCGGCGCAGAGGTG 10269 Query 6963 CCGTTCAAGTTCGTGCCGCTCGAGTCCGAGGTGGCGACGATCACCGGCGTCGTGGTGATC 7022 ||||| |||| | ||| | ||| | ||| | |||| ||| || || Sbjct 10270 GGGTTCACGTTCATCCCGGACACCACCGGCGAGGCCCGCGTGCGCGGCACCGTCATGGTC 10329 Query 7023 GACCCTGTCGAGTTCGGCGGCGACGTCAAGAAGCGCAACATCAGCGACGCCGAGTTCGA 7081 ||||| |||| |||| ||||||||||||||||||||| ||| |||||||||| Sbjct 10330 GACCCCATCGACCTCGGTGGCGACGTCAAGAAGCGCAAC--CAG----TCCGAGTTCGA 10382 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 54623612073420