Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq27002 419 1e-112 seq49429 206 2e-48 seq4588 82.4 5e-11 >seq27002 Length=7239 Score = 419 bits (464), Expect = 1e-112 Identities = 348/422 (82%), Gaps = 6/422 (1%) Strand=Plus/Plus Query 78221 GCCATCAACTGGAACAAGGT-CA--CCGACGAGGTCGACGACACCGTGTGGGATCGACTC 78277 || |||||||||||| || || |||| ||| || ||| || |||||||| ||| Sbjct 885 GCGATCAACTGGAACCGCGTGCAGGACGACAAGGACGCCGA---GGTCTGGGATCGCCTC 941 Query 78278 ACCGGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCATCCTGGGAC 78337 ||||||||||||||| | ||||||||||| |||||||||||||||||||| || ||| | Sbjct 942 ACCGGCAACTTCTGGCTCCCCGAGAAGGTGCCGGTGTCCAACGACATCCCGTCGTGGCAG 1001 Query 78338 ACCCTTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTCACCCTGCTC 78397 || || || | |||||| | ||||| ||||| |||||||||||||| || |||||| Sbjct 1002 ACGCTCACCGAACACGAGAAGCAGCTCACCATGCGGGTGTTCACCGGCCTGACGCTGCTC 1061 Query 78398 GACACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAACACCCCGCAC 78457 ||||||||||||||||| || |||||| | ||||||||| ||||||| | |||||||||| Sbjct 1062 GACACCATCCAGGGCACCGTGGGCGCCGTGTCGCTCATCCCCGACGCGATCACCCCGCAC 1121 Query 78458 GAGGAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAAGTCCTACAGC 78517 |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1122 GAGGAGGCGGTGTACACCAACATCGCGTTCATGGAGTCGGTGCACGCCAAGTCCTACTCG 1181 Query 78518 TCGATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCGTTCCGTTGGTCGGAG 78577 ||||||||||| || || |||||| | | | || ||||| |||||||| ||||||||| Sbjct 1182 TCGATCTTCTCCACCCTGTGCTCCACGCGGGACATCGACGACGCGTTCCGCTGGTCGGAG 1241 Query 78578 GAGAACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTACTACCGCGGCGACGAC 78637 |||||| |||||||||||||||| |||||| |||||||||||| ||||||||| Sbjct 1242 GAGAACCCCAACCTGCAGCGCAAGGCGTCCATCGTCATGGACTACTACCAGGGCGACGAC 1301 Query 78638 CC 78639 || Sbjct 1302 CC 1303 >seq49429 Length=1101 Score = 206 bits (228), Expect = 2e-48 Identities = 250/337 (74%), Gaps = 9/337 (3%) Strand=Plus/Plus Query 69673 CCGAACTCCGGTTCACGCCCTCCGGTGCCGCGGTCGCGAACTTCACCGTCGCGTCGACCC 69732 ||||||| || ||||| ||| ||||||| |||||||||||||||||||||||||| || | Sbjct 1 CCGAACTTCGATTCACCCCCGCCGGTGCGGCGGTCGCGAACTTCACCGTCGCGTCCACTC 60 Query 69733 CGCGGTACTTCGACAAGCAGTCGAACGAGTGGAAGGATGCCGAGGCACTCTTCCTGCGCT 69792 | || |||||| ||| | |||||||||||||| | ||| || || ||||| |||| Sbjct 61 CCCGCACCTTCGATCGCCAGACCAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCGCT 120 Query 69793 GCAACGTCTGGCGCGAGTACGCCGAGAACGTGACTGAGTCGCTCCAGAAGGGCGCCCGCG 69852 ||||| ||||||| ||| || |||||||| | ||||| || ||||| || | Sbjct 121 GCAACATCTGGCGTGAGGCAGCGGAGAACGTCGCCGAGTCCCTGACTCGCGGCGCACGGG 180 Query 69853 TCATCGTCCAGGGCAAGCTCAAGCAGCGGTCCTACGAGAAG---GATGGCCAGCCGCGCA 69909 | ||||| |||| |||| |||||| |||| ||||| | || || || ||||| Sbjct 181 TGGTCGTCACGGGCCGGCTCCGGCAGCGTTCCTTCGAGACGCGTGAGGGTGAGAAGCGCA 240 Query 69910 CCACCTTCGAGCTCGAGGTTGAGGAGATCGGCCCCGCACTCCGGTACGCCACCGCCCGGG 69969 | | |||| |||||||| || ||| ||||||| | ||||| ||||| || ||| || Sbjct 241 CTGTCGTCGAACTCGAGGTCGACGAGGTCGGCCCTTCGCTCCGCTACGCGACGGCCAAGG 300 Query 69970 TCACCAA-GTCA--CAGCGTGGCGGATTCGGTGGCGG 70003 ||| ||| |||| | ||||||| ||||||||| Sbjct 301 TCAACAAGGTCAGTCGCGGTGGCGG---CGGTGGCGG 334 >seq4588 Length=49850 Score = 82.4 bits (90), Expect = 5e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Minus Query 4263 GGGCGTAGCTCAATTGGAAGAGCAGCGGTCTCCAAAACCGCCGG-TGTAGGTTCGAGTCC 4321 ||||||||||||||||| |||||| ||||||||||||||| || || |||||| ||||| Sbjct 39129 GGGCGTAGCTCAATTGGTAGAGCAACGGTCTCCAAAACCGTAGGTTGCAGGTTCAAGTCC 39070 Query 4322 TGCCGCC 4328 || |||| Sbjct 39069 TGTCGCC 39063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299097723344660