Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_030935.1 Length=17727 Score E Sequences producing significant alignments: (Bits) Value seq6786 161 1e-35 >seq6786 Length=20090 Score = 161 bits (178), Expect = 1e-35 Identities = 481/729 (66%), Gaps = 51/729 (7%) Strand=Plus/Plus Query 2416 GTGGATCGACCGCACCAACGGCCCGGTGTCCCCGTACCACCGCATGGTCTGGACGGTCGA 2475 |||| |||||||||| |||||||||||||||||| ||| || ||| | || ||| Sbjct 5253 GTGGCTCGACCGCACGGACGGCCCGGTGTCCCCGTTCCATCGGATGCTGCTCACCTGCGA 5312 Query 2476 CGACTTGCTGTTCTACGGCTGGTCACTGTGGGCCTGCCAGCGCGGCACGG--GCGGCGCG 2533 |||| || | ||| |||||| || |||||| | | |||| |||| ||||| Sbjct 5313 CGACCTGTTCTTCCACGGCTACTCCGCGTGGGCGGTCGAACGCG--ACGGCTCCGGCGTC 5370 Query 2534 GTCATCGCCGCTGACCGCGTCCCGTTCGATCGCTGGCGCATCGACG---ACGGCGGCACG 2590 ||| ||||||| ||||| |||||||||| |||| ||||| | ||||| || Sbjct 5371 GTCGTCGCCGCCGACCGAATCCCGTTCGAGGACTGGTCCATCGGTGCGAACGGCCGC--- 5427 Query 2591 GTCCTGTTCGTCGACCACAACGGCACCGAGACGCCCGCCGACCCGGCGTCGGTCATCCTG 2650 ||||||| | ||| | | | | ||||||||| ||||||||| | Sbjct 5428 GTCCTGTACCGCGAGACCGAGGTC-----GACGCCCGC----------TCGGTCATCGTC 5472 Query 2651 ATCCCCGGC-AGTGACGAAGGACTACTCGCCGCGTCCTCGGGCACGGTCCGCCACGCGGT 2709 ||||||||| ||| |||||| | || | ||| | || |||||||||| Sbjct 5473 ATCCCCGGCGAGT-CCGAAGGCATCCTGAACTTCGGATCGACCCCGATCCGCCACGCCCG 5531 Query 2710 CAACCTGCTCGCCGCCGCCGACAAAGCCGCCGAGACCCCGGCGGCGAACATCGAGCTCCA 2769 | |||| ||||||| ||| ||| |||||| ||| ||||| | ||| || |||| | Sbjct 5532 CGACCTCGCCGCCGCCACCGCCAAGGCCGCCACGACACCGGCCACCAACGTCCTGCTCAA 5591 Query 2770 CCAGACC---AACGACCTCGTCATCGACGAGACCGAGGCGAAGGAGATGGT------CAA 2820 |||||| |||| | | | ||||| |||| |||| || || | | Sbjct 5592 GCAGACCTCGGGTGACCCACTGACCCGCGAGA---AGGCCAAGGCCATCGTGGACGACTA 5648 Query 2821 GGCGTGGGC-CGCCGCGCGCCGTGGCGAAAACGGGGGAGTGGCGTTCACCTCGAACGGTG 2879 | || ||| ||||||| | | ||| ||||| ||| ||||| ||||| | Sbjct 5649 CGTGTCGGCTCGCCGCGAG----GCCGACCACGGG---GTGTCGTTCGCCTCGGCCAACA 5701 Query 2880 TCGAGGTCCGTGAACACGGCACGTTCGA-CGCGCATCTGCTCGTCGATGGCCGCAACGCC 2938 |||| ||| || ||||| ||| | ||| ||| || |||| |||||||||||| Sbjct 5702 TCGACGTCATCGAGGCCGGCAAACGCGAGCCCGC-CCTGTTCATCGACGGCCGCAACGCC 5760 Query 2939 GCCGCCCTCGACTGCGCCCGCGTGCTGAGCCTGCCAGGTTCGGCACTCGATGCGACCGTC 2998 |||||| |||| ||||||| || || |||| | || ||||| || || | Sbjct 5761 GCCGCCGTCGATATCGCCCGCCTGACCGGCGTGCCGGCGTCCCTGCTCGACGCCGCCACC 5820 Query 2999 GATAAGGCGTCGCTGAACTACGAGACGCAAGAGGGCAAGGCCGCCGACCTGATCGACTAC 3058 | |||| ||| |||| ||| |||| ||| | || |||||||||| | Sbjct 5821 CCCGGCGGGTCGATGACCTACAAGAACACCGAGGCCAAAATCCAGGAGCTGATCGACTTC 5880 Query 3059 GGCCTGTCGGCGTACATGT-CGCCGATCACCGCCCGCCTCGGCATGGACGACGTTGTGCC 3117 | ||| | | ||||||| ||||| | ||||||||||||| ||||||||| | ||||| Sbjct 5881 GCCCTCGCCCCCTACATGTCCGCCG-TGGCCGCCCGCCTCGGGATGGACGACATGGTGCC 5939 Query 3118 GCGCGGTGT 3126 | |||||| Sbjct 5940 GGCCGGTGT 5948 Score = 143 bits (158), Expect = 3e-30 Identities = 273/401 (68%), Gaps = 12/401 (3%) Strand=Plus/Plus Query 5282 CACGCGCAGCTCGCCGACATCACGAACTCGACCATGATCGACGCCACGCCCGCCGGGTGG 5341 ||||| |||| ||||| ||||| | | | | || ||||| | | | ||| |||| Sbjct 8482 CACGCCGAGCTGGCCGATATCACCGTCGCCAACCAGACCGACGTCGCCGCACCCGCGTGG 8541 Query 5342 CTCGGTGAACTGTGGTCGGGACCGGCCAAGACCCGCGAAATCATCCCGCTGCTTAAGCAA 5401 |||||||| |||||||| || |||| | ||| |||||||| ||||| | Sbjct 8542 CTCGGTGAGCTGTGGTCCGGCGTGGCCTACCAGCGCCGCATCATCCCCCTGCTGACCACC 8601 Query 5402 CGCCCGCTGACGTCCTGGCGACTCAAGG------GTTTCCGGTGGACCGAAAAGCCGCTG 5455 || |||||||| | |||| ||||| | | ||| |||| ||||| | Sbjct 8602 CGGCCGCTGAC---CCGGCG---CAAGGCGGTCGGCTACCGCTGGAAGACCAAGCCCACG 8655 Query 5456 GTCGCCAAGTATGAGGGCGACAAGAAAGAGATTCCCACCAACGAAGTGGGCATCGCCCCG 5515 |||| ||||| | ||| |||||| || ||||| ||| | |||| | || | | Sbjct 8656 GTCGAGAAGTACGCCGGCAACAAGACCGACATTCCGACCGGCCCGGTGGAGACCGAACAG 8715 Query 5516 TACGAGTCCGAGGCGGTCCGCTGGGCGGGCGGCCACGACATCGACCGCAAGTTCTACGAC 5575 ||| ||| | || ||||| ||||| ||||||||||||||| ||||| |||| Sbjct 8716 GTGGAGATGACGGCCGAGCGGTGGGCCGGCGGTCACGACATCGACCGCGCGTTCTTCGAC 8775 Query 5576 TTCGGTGACACCGAAATCCTCGAGGCCTATTGGCGCGCGATGAACGAGTCGTACGCCGTG 5635 ||| |||||||| |||| | ||||| ||| ||||||||||||| ||||||| | Sbjct 8776 TTCAACGACACCGAGTTCCTGAACGCCTACTGGGCCGCGATGAACGAGAGCTACGCCGAG 8835 Query 5636 GTGACCGACCAGGACGCGGGCGCGTTCATCACCACCAACGC 5676 | |||||||| ||||| | || |||| | ||||||||| Sbjct 8836 GAGACCGACCTCGACGCCGCCGAGTTCCTGGACACCAACGC 8876 Score = 89.7 bits (98), Expect = 6e-14 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 6289 GGGCGCGGTCATGCTCGCCGGTCGGATCACCCGCCGCCGCAACTCACCGGGCGGCGTCGA 6348 |||||||||||||||||||| | || |||||| |||| | | |||| |||| | Sbjct 9491 GGGCGCGGTCATGCTCGCCGCCAAGCTCCACCGCCGTCGCAGCACCCCGGACGGCACGGT 9550 Query 6349 GACGTTCGGCGACATGGGCGCAACCTACGTCGCACGGTACGACCCCGACATCAACATGAT 6408 | || || ||| ||| | | ||||||||| |||| ||||||||| ||| |||| | Sbjct 9551 GGCGAACGAGGACTACGGCCCGATCTACGTCGCCCGGTCCGACCCCGATATCTCCATGCT 9610 Query 6409 GCTGGGCCTCGGCCCGT 6425 ||| |||||||||| || Sbjct 9611 GCTCGGCCTCGGCCGGT 9627 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 56567831493900