Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_030936.1 Length=93843 Score E Sequences producing significant alignments: (Bits) Value seq49429 241 8e-59 seq19136 120 2e-22 >seq49429 Length=1101 Score = 241 bits (266), Expect = 8e-59 Identities = 231/296 (78%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 72347 CCGAACTGCGCTTCACCCCCTCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCC 72406 ||||||| || ||||||||| | |||||| ||||||| |||||||||||||| ||| | Sbjct 1 CCGAACTTCGATTCACCCCCGCCGGTGCGGCGGTCGCGAACTTCACCGTCGCGTCCACTC 60 Query 72407 CCCGGTACTTCGACAAGCAGAGCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCT 72466 |||| |||||| |||| ||||||||||||||||| ||| ||||| ||||| |||| Sbjct 61 CCCGCACCTTCGATCGCCAGACCAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCGCT 120 Query 72467 GCAACATCTGGCGCGAGCCGGCCGAGAACGTCGCCGAGTCGCTGACCAAGGGCATGCGCG 72526 ||||||||||||| ||| | || ||||||||||||||||| ||||| ||| || | Sbjct 121 GCAACATCTGGCGTGAGGCAGCGGAGAACGTCGCCGAGTCCCTGACTCGCGGCGCACGGG 180 Query 72527 TCATCGTCCAGGGACGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGA 72586 | ||||| ||| || ||| |||||| || ||||||| || || ||||| || | Sbjct 181 TGGTCGTCACGGGCCGGCTCCGGCAGCGTTCCTTCGAGACGCGTGAGGGTGAGAAGCGCA 240 Query 72587 CGGTCATCGAGCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGCC 72642 | ||| |||| ||||||||||| ||| ||||||| |||| || ||||| || ||| Sbjct 241 CTGTCGTCGAACTCGAGGTCGACGAGGTCGGCCCTTCGCTCCGCTACGCGACGGCC 296 >seq19136 Length=6680 Score = 120 bits (132), Expect = 2e-22 Identities = 256/375 (68%), Gaps = 17/375 (5%) Strand=Plus/Plus Query 43034 GCGAGGCGAAGCTGGAGGCCGAGGGCCTCTTCCATCCACGCCACAAGCAGGCGCTCCCGC 43093 ||| ||| | ||| | ||| |||||||| ||| ||||||||| ||||| | | ||| Sbjct 610 GCGCGGC-ATGCTCGCGGCGGAGGGCCTGTTCGATCCACGCCTCAAGCGCCCCTTGCCGT 668 Query 43094 GTGTTCCGAAGTGCA-TCGGCCTGATCACCGCACCGAATAGCGACGCGGAGAAGGACGTG 43152 | ||| | || |||| ||| ||||||||| |||| ||| |||||||||||| Sbjct 669 -TCCTCCCCCGCGCCGTCGGACTGGTCACCGCACGTGCGAGCGCCGCCGAGAAGGACGTG 727 Query 43153 CTCAGCGTCGCGCGAGGACGGTGGTCGAGCGTCAGCTTCAAGCTGTCCCACATCAACGTC 43212 || ||||| ||| |||||||| || ||| | ||| || |||| |||| | Sbjct 728 CTGTCGGTCGCCCGACGACGGTGGCCGGCCGTGCGGTTCGAG--GTCCG----CAACACC 781 Query 43213 CAGGGGCAGCGCTGCGCCGGCGCGGC---GAA----GCGAGCCATCGAGGAGTTCGACGC 43265 | || |||| || || ||||| || | | ||| || |||| || |||||| Sbjct 782 CCGGTGCAGGGCC-CGTCGGCGGTGCCCGGCATCCTGCGTGCGATCGCCGAACTCGACGA 840 Query 43266 GGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAGACCTCCT 43325 | | || | ||| ||||| ||| | || || |||||||||||| ||| || || || Sbjct 841 GCATCCCGACGTCGACGTGATCGTTCTCGCGCGCGGCGGCGGCAGCGTGGAGGATCTTCT 900 Query 43326 CCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACCCCGGTTGTGTC 43385 ||||| |||||||| ||||| |||||||| ||||| | ||| ||| | || Sbjct 901 CCCGTTCTCCGACGAAGCTCTCTGTCGCGCCGTCGTCGCGGCCCGAACGCCGATCGTCAG 960 Query 43386 TGCGATTGGCCACGA 43400 ||||| || ||||| Sbjct 961 CGCGATCGGTCACGA 975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299948286692280