Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_030943.1 Length=54990 Score E Sequences producing significant alignments: (Bits) Value seq41448 645 1e-180 >seq41448 Length=1254 Score = 645 bits (714), Expect = 1e-180 Identities = 904/1263 (72%), Gaps = 38/1263 (3%) Strand=Plus/Minus Query 52907 CCGATCTCGCCGTGCAGGCGGCGGTGGTTGAACCATTCGACGTACTCAGCGACGGCGATC 52966 |||||||||||||| ||||| | ||||||| |||| |||||||| || |||||||||||| Sbjct 1253 CCGATCTCGCCGTGAAGGCGCCTGTGGTTGTACCAGTCGACGTATTCGGCGACGGCGATC 1194 Query 52967 TCGACCTCGCCCAC--ACCTGCCCAGCCGCCTCGCGGGCGCATCACGGGGTTACGGATGC 53024 ||||| ||| |||| || | ||||||||| || ||||| |||||||| ||||||| Sbjct 1193 TCGACGTCGACCACCGACTT--CCAGCCGCCCTTGGGTCGCATGACGGGGTTGCGGATGC 1136 Query 53025 ATTCGGCTTTGAACAGCGAGTTGAACGCCTCAGCCATCGCGTTGTCGTATGAATCCCCTT 53084 | ||||| |||||||||||||| | ||||| ||||| ||||||||||| || || | Sbjct 1135 ACTCGGCCTTGAACAGCGAGTTCAGTGCCTCGGCCATGGCGTTGTCGTAGCTGTCGCCCT 1076 Query 53085 TGGAGCCAACAGATGTCACCGCTTCGGCTTCGGCCAGTCGTTCGGTGTAGCGGATGGCTC 53144 | || || ||||| | ||| || ||||||||||| || || ||||||||||| || |||| Sbjct 1075 TCGATCCGACAGACGCCACGGCCTCGGCTTCGGCGAGCCGCTCGGTGTAGCGAATCGCTC 1016 Query 53145 GGTATTGCACTCCGCGGTCGGAGTGGTGGATCAGCCCGGCCACGTCGTGGCCGGCACGCG 53204 | || || || || | ||| ||| |||| ||| |||| ||||| || ||||| ||| Sbjct 1015 GATACTGAACGCCCCTATCGCTGTGATGGACCAGGCCGGTGACGTCCTGCCCGGCCCGCT 956 Query 53205 ACCGTGCCCACAATCCCATGTTCAGGGCGTCGAGGGCGAGGTCGGTGTGCATGGTGGTCG 53264 |||||||||| ||||||| ||||| ||||| || ||||||||| ||| | || | Sbjct 955 GACGTGCCCACAGGCCCATGTCGAGGGCATCGAGCGCCAGGTCGGTGCGCAACGACGTGG 896 Query 53265 AGACCTGCCAGCCGACGACCATCCGCGAGAACACGTCCAGGACGAACGCCGCGTACACCC 53324 | ||||||||||| |||| |||||| ||| |||||||||||||||||| |||| || Sbjct 895 ACACCTGCCAGCCCACGATCATCCGGCTGAAGACGTCCAGGACGAACGCCACGTAGGTCC 836 Query 53325 AGCCCGAGTGGGTGCGGATGTAGGTCAGGTCCGCCACCCACAACGCGTTCGGTGCCGCCG 53384 | || | ||| ||||||| ||||||||| || |||||||||| | |||||| || | | Sbjct 835 ACCCGGCGTGTGTGCGGACGTAGGTCAGATCGGCCACCCACAGCTGGTTCGGCGCAGTGG 776 Query 53385 CGGTGAACTGACGGTTGACCCGGTCAGCCGGCCGGGGTGTTTCAGCTCCCTCGCTGCGCG 53444 || |||||| ||||||||| ||| | ||||| || ||||| || |||| | | Sbjct 775 CGATGAACTTCCGGTTGACCTTGTCCTCGGGCCGCTCGGTCTCAGCGCCGTCGCCGATGG 716 Query 53445 TGGTCTTGCGTGTCTTGAGTCTCGCTATCCCTTGCAGCCCATCGGCTTTCATCAATCGCT 53504 |||||||||| ||||| | || ||||| |||| || ||||| ||||| |||| Sbjct 715 TGGTCTTGCGGGTCTTCTCCCGCGGGATCCCACGCAGGCCCTCGGCCCGCATCAGCCGCT 656 Query 53505 CGACGGTGCAGCGGGCAGCACTATGGCCCTG--TCTGCGCAATTGGGCATGCACCTTGCG 53562 |||||||||| ||||| ||| || || | || | | || ||| || | ||| || Sbjct 655 CGACGGTGCAACGGGC--CACCTTGACCTCGGATCGGTTGAGTTCGGCGTGGATCTTCCG 598 Query 53563 GGCACCGTAGACGCCGAGGTTGTCGGCATGCACCGCGCGGACCTGGGTAAGGAGCTCCCG 53622 | | ||||||||||||||||| | || | | | ||| | | | || || Sbjct 597 GACGCCGTAGACGCCGAGGTTCGCCTTGTGAGCGGTGTGGATGTCGACGACCAGTTCGGC 538 Query 53623 GTCACGCACCACACGAGGCGCCTCGGTCTTCTGGGGGCTCAGGTGGGCTCGTACCGTGGA 53682 ||||| ||| | | ||||| || | | || || | || | ||| ||| Sbjct 537 ATCACGGACCGCCC---GCGCCGAGGCCGGCCTGGTCTTC--GCGGCGTAGTA-GGTGCT 484 Query 53683 CGGAGCGATCTGGGCGGACGTATCGCGCAATGCCGCACAGATCGGATCGACTCCGTGTTC 53742 ||| |||||||| || | || ||| | | |||||||| ||||| ||| Sbjct 483 CGGGGCGATCTGCACGCCGGCGTCCTTCAAGACGCCGCAGATCGGCTCGACCCCGAACCG 424 Query 53743 ATCGCGGTGAGCCGCGACGAACTCCACGATCAGCGCTGTGG------------------G 53784 |||||||| | ||| | | || || | || ||| |||| | Sbjct 423 GTCGCGGTGCTCATCGATGTAGTCGACCAGCACCGCGGTGGGCACTGCTACTTGATCTTG 364 Query 53785 CGGTCGATCTCC---GCCGCAAAGAAAGCCGAAGCCTGCTTCAAGATCGTGTTCGCTCGC 53841 ||||||| |||| ||||| || ||||| | | |||||||||| ||| || || Sbjct 363 CGGTCGAGCTCCGCGGCCGCGAAAAAAGCTGCGCTCGTCTTCAAGATCTCGTTGGCGCGA 304 Query 53842 CGCAGTTCACGGTTCTCCCGCTCCAACGCCGCGATGCGGTCAGCGTCCTCACTCGTGGTG 53901 ||||| || ||| ||| ||||| | | | || | ||| ||||| || | || ||| Sbjct 303 CGCAGCTCGCGGACCTCACGCTCGAGCTCGGCCAGCCGGGTCGCGTCATCTGTGGTCGTG 244 Query 53902 CCCGGGCGGACCCCGCCGTCGATCTCGGCCTGACGAACCCAATTGCGCAACGCCTCGGGA 53961 ||||| ||||| ||||| |||||||| ||||| || ||||| | | || |||||||| Sbjct 243 CCCGGCCGGACACCGCCATCGATCTCTGCCTGCCGGACCCAGGTCCTCAGGGCCTCGGGG 184 Query 53962 TGGACTCCGAGCTGATCGGCGATCCGCTTGATCGCACCTCTCGACGAATCGGGATCTCGT 54021 ||||| |||||||| || |||| |||||||||||| || | || ||| || || || Sbjct 183 TGGACCCCGAGCTGTTCAGCGACCCGCTTGATCGCCCCGCGCGCCGACTCCGGGTCCTTC 124 Query 54022 CGCGCTTCACATGCCATCCGGGTGGCCCGGTCCTTGAGTTCCTCACTGTACTTGCGTGGT 54081 || || || |||||||| |||||||| | || ||| || | |||||||| | ||| Sbjct 123 CGGGCATCGATCGCCATCCGCGTGGCCCGCTGCTGGAGCTCAACGCTGTACTTCCTCGGT 64 Query 54082 GCTGCCATG-CTCTC--CATCCTTCACAGGTTCGAGAGCCTCCGACAGACCCGGGGCGGT 54138 ||||||||| ||||| |||||||| |||| | |||| ||||| ||||||||||||| | Sbjct 63 GCTGCCATGACTCTCATCATCCTTCCCAGGATTGAGAACCTCCATCAGACCCGGGGCGAT 4 Query 54139 TCA 54141 ||| Sbjct 3 TCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175718248638880