Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq41448 645 2e-180 seq49429 228 5e-55 seq19136 120 2e-22 >seq41448 Length=1254 Score = 645 bits (714), Expect = 2e-180 Identities = 904/1263 (72%), Gaps = 38/1263 (3%) Strand=Plus/Plus Query 6452 TGAACCGCCCCGGGTCTGTCGGAGGCTCTCGAACCTGTGAAGGATG--GAGAG-CATGGC 6508 |||| ||||||||||||| ||||| |||| | |||| |||||||| ||||| |||||| Sbjct 1 TGAATCGCCCCGGGTCTGATGGAGGTTCTCAATCCTGGGAAGGATGATGAGAGTCATGGC 60 Query 6509 AGCACCACGCAAGTACAGTGAGGAACTCAAGGACCGGGCCACCCGGATGGCATGTGAAGC 6568 |||||| | |||||||| | || ||| || | |||||||| |||||||| || || Sbjct 61 AGCACCGAGGAAGTACAGCGTTGAGCTCCAGCAGCGGGCCACGCGGATGGCGATCGATGC 120 Query 6569 GCGACGAGATCCCGATTCGTCGAGAGGTGCGATCAAGCGGATCGCCGATCAGCTCGGAGT 6628 || || || || ||| || | || |||||||||||| |||| || |||||||| || Sbjct 121 CCGGAAGGACCCGGAGTCGGCGCGCGGGGCGATCAAGCGGGTCGCTGAACAGCTCGGGGT 180 Query 6629 CCATCCCGAGGCGTTGCGCAATTGGGTTCGTCAGGCCGAGATCGACGGCGGGGTCCGCCC 6688 ||| |||||||| || | | ||||| || ||||| |||||||| ||||| ||||| || Sbjct 181 CCACCCCGAGGCCCTGAGGACCTGGGTCCGGCAGGCAGAGATCGATGGCGGTGTCCGGCC 240 Query 6689 GGGCACCACGAGTGAGGACGCTGACCGCATCGCGGCGTTGGAGCGGGAGAACCGTGAACT 6748 |||||| || | || ||||| ||| | || | | | ||||| ||| ||| || || Sbjct 241 GGGCACGACCACAGATGACGCGACCCGGCTGGCCGAGCTCGAGCGTGAGGTCCGCGAGCT 300 Query 6749 GCGGCGAGCGAACACGATCTTGAAGCAGGCTTCGGCTTTCTTTGCGGC---GGAGATCGA 6805 ||| || || ||| |||||||||| | | ||||| || ||||| |||| |||| Sbjct 301 GCGTCGCGCCAACGAGATCTTGAAGACGAGCGCAGCTTTTTTCGCGGCCGCGGAGCTCGA 360 Query 6806 CCGC------------------CCACAGCGCTGATCGTGGAGTTCGTCGCGGCTCACCGC 6847 |||| |||| ||| || | || || | | ||| | |||||| Sbjct 361 CCGCAAGATCAAGTAGCAGTGCCCACCGCGGTGCTGGTCGACTACATCGATGAGCACCGC 420 Query 6848 GATGAACACGGAGTCGATCCGATCTGTGCGGCATTGCGCGATACGTCCGCCCAGATCGCT 6907 || ||| ||||| |||||||| | | ||| || | || |||||||| Sbjct 421 GACCGGTTCGGGGTCGAGCCGATCTGCGGCGTCTTGAAGGACGCCGGCGTGCAGATCGCC 480 Query 6908 CCGTCCACGGTACGAGCCCACCTGAGCCCCCAGAAGACCGAGGCGCCTCGTGTGGTGCGT 6967 ||| ||| ||| | || | || || | | || ||||| | | ||| ||| Sbjct 481 CCGAGCACC-TACTACGCCGC--GAAGACCAGGCCGGCCTCGGCGC---GGGCGGTCCGT 534 Query 6968 GACCGGGAGCTCCTTACCCAGGTCCGCGCGGTGCATGCCGACAACCTCGGCGTCTACGGT 7027 || || || | | | ||| | | | || | ||||||||||||||||| Sbjct 535 GATGCCGAACTGGTCGTCGACATCCACACCGCTCACAAGGCGAACCTCGGCGTCTACGGC 594 Query 7028 GCCCGCAAGGTGCATGCCCAATTGCGCAGA--CAGGGCCATAGTGCTGCCCGCTGCACCG 7085 | ||| ||| | || ||| || | | || | || || ||| ||||| ||||||| Sbjct 595 GTCCGGAAGATCCACGCCGAACTCAACCGATCCGAGGTCAAGGTG--GCCCGTTGCACCG 652 Query 7086 TCGAGCGATTGATGAAAGCCGATGGGCTGCAAGGGATAGCGAGACTCAAGACACGCAAGA 7145 ||||||| ||||| ||||| || |||| ||||| || | ||||| ||||||| Sbjct 653 TCGAGCGGCTGATGCGGGCCGAGGGCCTGCGTGGGATCCCGCGGGAGAAGACCCGCAAGA 712 Query 7146 CCACGCGCAGCGAGGGAGCTGAAACACCCCGGCCGGCTGACCGGGTCAACCGTCAGTTCA 7205 |||| | |||| || ||||| || ||||| | ||| ||||||||| |||||| Sbjct 713 CCACCATCGGCGACGGCGCTGAGACCGAGCGGCCCGAGGACAAGGTCAACCGGAAGTTCA 772 Query 7206 CCGCGGCGGCACCGAACGCGTTGTGGGTGGCGGACCTGACCTACATCCGCACCCACTCGG 7265 ||| | || |||||| | |||||||||| || ||||||||| ||||||| ||| | | Sbjct 773 TCGCCACTGCGCCGAACCAGCTGTGGGTGGCCGATCTGACCTACGTCCGCACACACGCCG 832 Query 7266 GCTGGGTGTACGCGGCGTTCGTCCTGGACGTGTTCTCGCGGATGGTCGTCGGCTGGCAGG 7325 | ||| |||| |||||||||||||||||| ||| |||||| |||| |||||||||| Sbjct 833 GGTGGACCTACGTGGCGTTCGTCCTGGACGTCTTCAGCCGGATGATCGTGGGCTGGCAGG 892 Query 7326 TCTCGACCACCATGCACACCGACCTCGCCCTCGACGCCCTGAACATGGGATTGTGGGCAC 7385 | || || | ||| ||||||||| || ||||| ||||| ||||||| ||||||||| Sbjct 893 TGTCCACGTCGTTGCGCACCGACCTGGCGCTCGATGCCCTCGACATGGGCCTGTGGGCAC 952 Query 7386 GGTCGCGTGCCGGCCACGACGTGGCCGGGCTGATCCACCACTCCGACCGCGGAGTGCAAT 7445 | ||| ||||| || ||||| |||| ||| |||| ||| ||| | || || || | Sbjct 953 GTCAGCGGGCCGGGCAGGACGTCACCGGCCTGGTCCATCACAGCGATAGGGGCGTTCAGT 1012 Query 7446 ACCGAGCCATCCGCTACACCGAACGACTGGCCGAAGCCGAAGCGGTGACATCTGTTGGCT 7505 | ||||| || ||||||||||| || || ||||||||||| || ||| | ||||| || | Sbjct 1013 ATCGAGCGATTCGCTACACCGAGCGGCTCGCCGAAGCCGAGGCCGTGGCGTCTGTCGGAT 1072 Query 7506 CCAAAGGGGATTCATACGACAACGCGATGGCTGAGGCGTTCAACTCGCTGTTCAAAGCCG 7565 | || || || ||||||||||| ||||| ||||| | |||||||||||||| |||| Sbjct 1073 CGAAGGGCGACAGCTACGACAACGCCATGGCCGAGGCACTGAACTCGCTGTTCAAGGCCG 1132 Query 7566 AATGCATCCGTAACCCCGTGATGCGCCCGCGAGGCGGCTGGGCAGGT--GTGGGCGAGGT 7623 | |||||||| |||||||| ||||| || ||||||||| | || |||| ||| || Sbjct 1133 AGTGCATCCGCAACCCCGTCATGCGACCCAAGGGCGGCTGG--AAGTCGGTGGTCGACGT 1190 Query 7624 CGAGATCGCCGTCGCTGAGTACGTCGAATGGTTCAACCACCGCCGCCTGCACGGCGAGAT 7683 ||||||||||||||| || |||||||| |||| ||||||| | ||||| ||||||||||| Sbjct 1191 CGAGATCGCCGTCGCCGAATACGTCGACTGGTACAACCACAGGCGCCTTCACGGCGAGAT 1250 Query 7684 CGG 7686 ||| Sbjct 1251 CGG 1253 >seq49429 Length=1101 Score = 228 bits (252), Expect = 5e-55 Identities = 228/296 (77%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 72660 CCGAACTGCGCTTCACCCCCTCGGGTGCGCCGGTCGCCAACTTCACCGTCGCAAGCACCC 72719 ||||||| || ||||||||| | |||||| ||||||| |||||||||||||| ||| | Sbjct 1 CCGAACTTCGATTCACCCCCGCCGGTGCGGCGGTCGCGAACTTCACCGTCGCGTCCACTC 60 Query 72720 CGCGGTACTTCGACAAGCAGTCCAACGAGTGGAAGGACGCCGAGGCGCTCTTCCTGCGCT 72779 | || |||||| ||| |||||||||||||||||| ||| ||||| ||||| |||| Sbjct 61 CCCGCACCTTCGATCGCCAGACCAACGAGTGGAAGGACGGCGACGCGCTGTTCCTCCGCT 120 Query 72780 GCAACATCTGGCGCGAGCCGGCCGAGAACGTCACCGAGTCGCTGTCCAAGGGCATGCGCG 72839 ||||||||||||| ||| | || ||||||||| ||||||| ||| | ||| || | Sbjct 121 GCAACATCTGGCGTGAGGCAGCGGAGAACGTCGCCGAGTCCCTGACTCGCGGCGCACGGG 180 Query 72840 TCATCGTCCAGGGTCGCCTCAAGCAGCGCAGCTACGAGACGAAGGAAGGCGAGAACCGGA 72899 | ||||| ||| || ||| |||||| || ||||||| || || ||||| || | Sbjct 181 TGGTCGTCACGGGCCGGCTCCGGCAGCGTTCCTTCGAGACGCGTGAGGGTGAGAAGCGCA 240 Query 72900 CGGTCATCGAGCTCGAGGTCGAGGAGATCGGCCCCGCGCTGCGGTACGCCACCGCC 72955 | ||| |||| ||||||||||| ||| ||||||| |||| || ||||| || ||| Sbjct 241 CTGTCGTCGAACTCGAGGTCGACGAGGTCGGCCCTTCGCTCCGCTACGCGACGGCC 296 >seq19136 Length=6680 Score = 120 bits (132), Expect = 2e-22 Identities = 256/375 (68%), Gaps = 17/375 (5%) Strand=Plus/Plus Query 43893 GCGAGGCGAAGCTGGAGGCCGAGGGCCTCTTCCATCCACGCCACAAGCAGGCGCTCCCGC 43952 ||| ||| | ||| | ||| |||||||| ||| ||||||||| ||||| | | ||| Sbjct 610 GCGCGGC-ATGCTCGCGGCGGAGGGCCTGTTCGATCCACGCCTCAAGCGCCCCTTGCCGT 668 Query 43953 GTGTTCCGAAGTGCA-TCGGCCTGATCACCGCACCGAATAGCGACGCGGAGAAGGACGTG 44011 | ||| | || |||| ||| ||||||||| |||| ||| |||||||||||| Sbjct 669 -TCCTCCCCCGCGCCGTCGGACTGGTCACCGCACGTGCGAGCGCCGCCGAGAAGGACGTG 727 Query 44012 CTCAGCGTCGCGCGAGGACGGTGGTCGAGCGTCAGCTTCAAGCTGTCCCACATCAACGTC 44071 || ||||| ||| |||||||| || ||| | ||| || |||| |||| | Sbjct 728 CTGTCGGTCGCCCGACGACGGTGGCCGGCCGTGCGGTTCGAG--GTCCG----CAACACC 781 Query 44072 CAGGGGCAGCGCTGCGCCGGCGCGGC---GAA----GCGAGCCATCGAGGAGTTCGACGC 44124 | || |||| || || ||||| || | | ||| || |||| || |||||| Sbjct 782 CCGGTGCAGGGCC-CGTCGGCGGTGCCCGGCATCCTGCGTGCGATCGCCGAACTCGACGA 840 Query 44125 GGACCCGGGCGTGGACGTCATCATCCTGGCCCGCGGCGGCGGCTCGAAGGAAGACCTCCT 44184 | | || | ||| ||||| ||| | || || |||||||||||| ||| || || || Sbjct 841 GCATCCCGACGTCGACGTGATCGTTCTCGCGCGCGGCGGCGGCAGCGTGGAGGATCTTCT 900 Query 44185 CCCGTGGTCCGACGAGGCTCTGGTTCGCGCCGCGTTCGCGTCTGCAACCCCGGTTGTGTC 44244 ||||| |||||||| ||||| |||||||| ||||| | ||| ||| | || Sbjct 901 CCCGTTCTCCGACGAAGCTCTCTGTCGCGCCGTCGTCGCGGCCCGAACGCCGATCGTCAG 960 Query 44245 TGCGATTGGCCACGA 44259 ||||| || ||||| Sbjct 961 CGCGATCGGTCACGA 975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299446262460790