Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq316 102 1e-16 >seq316 Length=1680448 Score = 102 bits (112), Expect = 1e-16 Identities = 187/266 (70%), Gaps = 20/266 (8%) Strand=Plus/Plus Query 44363 TCCCGTTGATCCAAATCCTTGAGCGTCTCTATTGGTAC-----TATCTAGAGATTGT-AC 44416 ||| |||||||||||||||| || ||||| || | || | ||||| | Sbjct 1398032 TCCTGTTGATCCAAATCCTTTCGCTCCTCTAACTGTGCATTTTAATTTGTCAATTGTAAT 1398091 Query 44417 TTCCTCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGT 44476 |||||| | |||||||| |||| |||| | | |||||||| || ||||| || || | Sbjct 1398092 TTCCTC-AATTCAGGATAGAATATGCGTTCACATATTAGTTGTGCAATTCTGTCCCCAAT 1398150 Query 44477 ATTTATTTTAAA---GGTATCTTTTCCAT-TATTGATCAAAATTACTCCAATGTTCCCCC 44532 ||||| |||||| |||| || || ||| | ||| | ||| ||||| || || | Sbjct 1398151 ATTTACTTTAAACTCGGTA----CTCGATAAATTAAACAATAATACACCAATATTGCCTC 1398206 Query 44533 TATAATCTTCATCTATTACTCCACCTCCCACATCAATACC---TTTTAGAGAAAGACCC- 44588 |||||||| ||| || || ||| |||| || | ||| || ||||| | || |||| Sbjct 1398207 AATAATCTTTATCAATAACACCAGCTCCTACGTGAATCCCATATTTTA-ATAATAACCCT 1398265 Query 44589 GATCTAGGCGCTATTCTTCCATAACA 44614 ||||| ||| |||| | ||||||||| Sbjct 1398266 GATCTGGGCACTATCCGTCCATAACA 1398291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712387490198400