Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq13874 257 5e-64 seq20448 190 7e-44 >seq13874 Length=14992 Score = 257 bits (284), Expect = 5e-64 Identities = 482/699 (69%), Gaps = 22/699 (3%) Strand=Plus/Minus Query 39723 GGGTAGTCCCACTGCGTCACGGTCACGCCGTCCGCAGGGCGGACCCACACCGGGAGGTGA 39782 |||||||||||| || | | | |||||||| || || ||||||||| | | Sbjct 10863 GGGTAGTCCCACCCGGTGATGATGGCGCCGTCCTGCGGACGCTTCCACACCGGAATGGCG 10804 Query 39783 TCGACCAACGGCTCGTTGGACATGATCACACCGGCCGCGTGAACGCCCATCTGCCGGACG 39842 ||| | ||||||| ||||||||| || || || || |||||| | |||| Sbjct 10803 TCGGTGAGCGGCTCGGAGGACATGATGACCGCGCAGGCATGGACGCCCGCGTTGCGGATC 10744 Query 39843 AGACCTTCGAG--CCCGAGCGCAGTGTCGATGACCTGCTTCGA-GTCCGGGTCGTTCTCG 39899 ||||| ||||| |||||||| |||||| || || ||| |||||||| | |||| Sbjct 10743 AGACCCTCGAGGCCCCGAGCG--GTGTCGTAGATCTTGG-CGACGTCCGGGTTGGACTCG 10687 Query 39900 TACAGCCCACGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATGCCC 39959 ||| |||| |||| | || || | ||| ||| |||| |||| | |||||| Sbjct 10686 ATGAGCGAGCGGACCTCGGCGGCTTCCTTGTACCGCTCGTGCGTGGGGTCGGTGATGCCG 10627 Query 39960 TCCAGGGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCG 40019 | | | || ||| |||| | | | ||| ||||||||| | || ||| || Sbjct 10626 GCGACCGAGATGTCCTTGGCCATGATGGGCGGCGGCAGCGCCTTGGTGATCTGGTCGGCG 10567 Query 40020 ACCTGGAAG---GGCTTGTCCA---GCACGCGCGCCGCGTCCTTCAT---CGCGTTGCGC 40070 | |||| |||| | | | ||||||| || | |||||| || ||| ||| Sbjct 10566 ATGGCGAAGCCGGGCTGGCCGAACTGCACGCGGGCGGAGTCCTTGATGGCCGCCTTG--- 10510 Query 40071 GCCTTGATCCGACCGAAGGTCCCGATCTGTGCGACCTTGTCC--GCCCCGTACTTCTCGG 40128 | |||||| ||||| || | ||| || ||| ||| ||||| ||||||||| Sbjct 10509 GTCTTGATGGTGCCGAACGTGATCACCTGGGCCACCCGGTCGCTGCCCC--ACTTCTCGG 10452 Query 40129 TGACGTACCTGATCACGTCGCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCA 40188 || |||| | | || ||||| || || || || |||||||||||||| | |||||||| Sbjct 10451 TGGCGTAGCGCACCATCTCGCCGCGGCGGCGATCGTCGAAGTCGATGTCGATGTCGGGCA 10392 Query 40189 TGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCA 40248 | ||||||||||||||||| ||||| |||||||||| || |||||||||| ||||| | Sbjct 10391 TCGACACGCGCTCGGGGTTGAGGAAGCGCTCGAAGAGCAGTCCGTGCGGGAGCGGGTCGA 10332 Query 40249 GGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTC 40308 || |||||||| | |||||| || || || ||||| ||||| ||||| || |||| Sbjct 10331 TGTTGGTGATGCCCATCGCGTAGGCCACGAGGGACCCGGCGGCCGATCCACGACCCGGTC 10272 Query 40309 CGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGG 40368 |||| | | ||| ||| || ||||| ||| |||| || |||||||||| Sbjct 10271 CGACGCGGATACCGACCTCGCGCGCGTGCTTGATGAGGTCCCCGACCACGAGGAAGTAGG 10212 Query 40369 ACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTACT 40407 |||||| |||| || || ||| | | |||||||||||| Sbjct 10211 CCGGGAAGCCCATCTCGAGGATGACGGCGATCTCGTACT 10173 >seq20448 Length=9219 Score = 190 bits (210), Expect = 7e-44 Identities = 290/408 (71%), Gaps = 4/408 (1%) Strand=Plus/Minus Query 41021 GTCCATGCGCGGGTACTTCCCGAGCAGGCCCTCCTGGTACGAGCGGGAGCTGAGCTTCAT 41080 ||||||||||| |||| || ||| | ||||| | ||| | | || ||||| | Sbjct 484 GTCCATGCGCGCCCACTTGCCCAGCTGCCCCTCGATGGACGCGAGCGACGACAGCTTGAA 425 Query 41081 GAGGTTGTGCAGGCCGGTCTTGTTCTCCGCGAGGATCGTGAGGTGCGTGTACGCACCGCG 41140 ||||| |||| ||||| ||||||||||| || || | |||||||||||| |||| Sbjct 424 CAGGTTCCGCAGACCGGTGGCGTTCTCCGCGACCATGGTCATGTGCGTGTACGCGCCGCT 365 Query 41141 ACCGCTCACGTCGTAACGCTTCTGGTCCTCGGT-GCCCCACTTGACGCGCTCCTGGTCGA 41199 || |||||||| |||||| | || | ||||||| ||||||| || ||||| Sbjct 364 GCCCGACACGTCGTCCGACTTCTGA-CTGCGATCGCCCCACAGCACGCGCTTCTTGTCGA 306 Query 41200 AGCGCGAGCCCGGAGCCATGTACGCCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCT 41259 ||||||| |||| || |||||||||||||| |||||||||||||||| || || || Sbjct 305 AGCGCGACTCCGGCGCGATGTACGCCTCGATCCCGATGATCGGCTTGATGCCGGCCTTCT 246 Query 41260 GAGCCGTGGTGAAGAAGTCGTGGGCACCGTGCAGGTTGCCGTGGTCAGTGACTGCGACTG 41319 ||| | || |||| ||| ||| |||| || |||||||||||| || | | | || | Sbjct 245 TGGCCTCGTTGTAGAACTCGCTGGCCCCGTACATGTTGCCGTGGTCGGTCATTCCCACCG 186 Query 41320 CCGGGGAGCCC-TGTCGGGCAACCTCGGCGACCATTTGCTTCATCCGAGCGGCCCCGTCG 41378 || | ||| | || |||| |||| || || ||| ||||| ||||| Sbjct 185 -CGCTCATCCCGAGGCGCTGCGCCTCCGCGAACAGCGGCGCGATCTTCGCGGCGCCGTCC 127 Query 41379 AGGAGCGAGTACTCGGAGTGGTTGTGGAGGTGGACGAACTCGGTCACG 41426 || | |||||||||| ||| |||||||| || ||||| || | |||| Sbjct 126 AGCATGGAGTACTCGGTGTGATTGTGGAGATGAACGAAGTCCGACACG 79 Score = 131 bits (144), Expect = 5e-26 Identities = 173/235 (74%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 38922 ACGTCGGGCGGCAGGACG-TGAAGTCCC-ATCCGCCGTGCCTCGCCGAGGTA---CGTGG 38976 |||||||||||||| ||| ||| |||| | | || ||| | ||||| || || Sbjct 3187 ACGTCGGGCGGCAGCACGGTGA--TCCCGAGCTTGCGGCAGTCGGCCAGGTAGACCGCGG 3130 Query 38977 CCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGT 39036 || |||| |||||||||||| || || ||||||| ||||||||||||| ||||||| Sbjct 3129 CC---TTGTCCTTGTCGTCGCCGACGGACGTGAGCAGACCCGCCATGTACTCCGCCGGGT 3073 Query 39037 AGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGACCGTACGCCGCAGAGTGCGCCT 39096 ||| | ||| || || | || | ||| | || ||| ||||| |||| | ||||| || Sbjct 3072 AGTTGGCCTTGAGATAGCCGGTCCAGTACGAGACGAGCCCGTATCCCGCGGCGTGCGACT 3013 Query 39097 TGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCTGGATGGC 39151 ||||||| ||||| || ||||| || | || |||||||| |||| |||||| Sbjct 3012 TGTTGAACGCGTAGCCCGCGAACGGGAGGATGGTGTCCCACAGAGCCTTGATGGC 2958 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160024094389360