Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq154 132 1e-25 seq1475 109 1e-18 >seq154 Length=1683969 Score = 132 bits (146), Expect = 1e-25 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| | || || || ||||| || ||||||||||| |||| | || | Sbjct 578593 AGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGG 578534 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || |||||||| || | ||||||||| | | ||||||||| Sbjct 578533 CCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCC 578474 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || |||||||| || |||||| |||| | | | || || ||| ||||| | ||| Sbjct 578473 TTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCTAAAGTG 578414 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 |||||||| || || | ||||||||||||| |||||| Sbjct 578413 ATAGTTTTACCAGTCAATGTCTTCACGAAGATCTGCAT 578376 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| | || || || |||||||| ||||||||||| || | | || | Sbjct 580014 AGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTACGG 579955 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || |||||||| || | ||||||||| | | ||||||||| Sbjct 579954 CCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCC 579895 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||||||||| |||||| |||| | | | || || ||| ||||| | ||| Sbjct 579894 TTATCTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTCAACTTCCAAAGTG 579835 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || | ||||||||||| | |||||| Sbjct 579834 ATGGTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 Score = 125 bits (138), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| | || || || ||||| || ||||||||||| || | | || | Sbjct 580242 AGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGG 580183 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| || ||||| || ||||||||||| | |||||| || | | ||||||| Sbjct 580182 CCATCTTCCAGCTGCTTT--CCAGCGAAGATAAGTCGCTGCTGATCTGGGGGAATTCCTT 580125 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| |||||||| || |||||| |||| | | | || || ||| ||||| | || Sbjct 580124 CCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTCAACTTCCAAAG 580065 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || || | ||||||||||||| |||||| Sbjct 580064 TGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCAT 580025 Score = 123 bits (136), Expect = 6e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 ||||| | |||||| ||||| || || ||||||||||| || | | |||| ||||| Sbjct 580464 AGGACTAAATGAAGTGTAGATTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGGCCATCC 580405 Query 151953 TCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTT 152010 || || ||||| || ||||||||||| | ||||||||| | | ||||||||||| | Sbjct 580404 TCAAGCTGCTTT--CCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTAT 580347 Query 152011 CTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAG 152070 |||||| ||| |||||| | || | | | || || ||| || || | ||||| | Sbjct 580346 CTTGAACTTTAGCCTTGACATTTTCAATGGTATCAGATGGCTCAACCTCCAAGGTAATTG 580287 Query 152071 TTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || || || ||||||||||| | |||||| Sbjct 580286 TCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 580253 Score = 116 bits (128), Expect = 9e-21 Identities = 159/220 (72%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| | || || || |||||||| ||||||||||| || | | ||| | Sbjct 579049 AGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTACGG 578990 Query 151947 CCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 |||||||| || ||||| || |||||||| || | ||||||||| | | ||||||| Sbjct 578989 CCATCTTCCAGCTGCTTT--CCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTT 578932 Query 152005 CCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAG 152064 |||| ||||| || || || ||| |||| | | || || ||| ||||| | | Sbjct 578931 CCTTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCAGATGGCTCAACTTCCAAGG 578872 Query 152065 TAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || ||||| || || || || |||||||||| |||||| Sbjct 578871 TGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 578832 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| | || || || ||||| || ||||| ||||| |||| | || | Sbjct 578821 AGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTCGGAGAGGGTACGG 578762 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || || || |||||||| || | ||||||||| | | |||||||| Sbjct 578761 CCATCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGGGGAATTCCTTCT 578702 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| ||||| ||| || |||| | | | || ||| ||| ||||| | || Sbjct 578701 TTATCTTGGATTTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCTCAACTTCCAATGTG 578642 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || ||||||||||| | |||||| Sbjct 578641 ATGGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 578604 Score = 109 bits (120), Expect = 1e-18 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| | || || || ||||| || ||||||||||| || | | || | Sbjct 579786 AGTCGCAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTACGG 579727 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 |||||||| || ||| || |||||||| || | ||||||||| | | ||||||||| Sbjct 579726 CCATCTTCCAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCC 579667 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || ||||| || || || ||| |||| | | || || ||| ||||| | || Sbjct 579666 TTATCTTGGATCTTGGCCTTAACATTCTCAATAGTATCGGATGGCTCAACTTCCAAGGTG 579607 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| || || || || |||||||||| |||||| Sbjct 579606 ATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 579569 >seq1475 Length=480095 Score = 109 bits (120), Expect = 1e-18 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 151915 CTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGA 151974 |||| || || ||||| || | | ||| | ||||||||||| ||| ||||| || | Sbjct 62653 CTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAAA 62712 Query 151975 TAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCT 152034 | || | ||||||||| | | |||||| ||||| || || || ||| |||||| | | Sbjct 62713 TCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGTATCTTTGCCTTGACATTTT 62772 Query 152035 CTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGA 152094 | | ||||||| ||| || ||||| ||||| ||||| |||||||| || ||||| | Sbjct 62773 CAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACAA 62832 Query 152095 AGACCTGCATTTT 152107 | | ||||| || Sbjct 62833 AAATTTGCATGTT 62845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152913547099270