Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1481 114 9e-21 seq154 114 9e-21 seq1475 98.7 7e-16 >seq1481 Length=432034 Score = 114 bits (126), Expect = 9e-21 Identities = 121/157 (77%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 44183 TCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTT 44242 || || | |||||||||||||||||||| ||||||||||| | ||| | |||||||| Sbjct 233800 TCTTCTAACTGCTTCCCGGCAAAGATCAGGCGCTGCTGATCAGGAGGAATCCCTTCCTTG 233859 Query 44243 TCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAAT 44301 || |||||| || | || ||| | || ||||| | || || ||||||| |||||| Sbjct 233860 TCTTGAATCTTC-GCCTTAACATTCTCGATCGTGTCAGAGGGCTCTACCTCCAACGTAAT 233918 Query 44302 CGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||| ||||| ||||| ||||| || || || |||||| Sbjct 233919 CGTTTTTCCTGTGAGCGTCTTTACAAAAATCTGCATG 233955 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || |||||||| | || ||| |||||||| ||| ||||||||| ||||||||||| | Sbjct 222096 CCACCTCTCAGACGCAGCACAAGGTGAAGTGTGGACTCCTTTTGAATGTTGTAATCAGAA 222155 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 ||| ||| | || |||| ||| || || ||||| ||||| | |||||| |||| || Sbjct 222156 AGTGTGCGACCATCTTCCAACTGTTTTCCTGCAAAAATCAATCTCTGCTGGTCTGGGGGG 222215 Query 44231 ACACCTTCCTTTTC 44244 | ||||| || || Sbjct 222216 ATTCCTTCTTTGTC 222229 >seq154 Length=1683969 Score = 114 bits (126), Expect = 9e-21 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||||| || |||| ||| || || |||||| ||||||||||| || Sbjct 579799 CATACCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTC 579740 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || | || |||||||| || || || ||||| | |||||||| |||| Sbjct 579739 AGAGAGGGTACGGCCATCTTCCAGCTGTTTACCAGCGAAGATGAGTCGCTGCTGGTCTGG 579680 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| || ||||| ||| || ||| | || || |||| | | Sbjct 579679 AGGAATTCCTTCCTTATCTTGGATCTTGGCCTT-AACATTCTCAATAGTATCGGATGGCT 579621 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || || || ||||| || ||||| ||||||||||| ||||| Sbjct 579620 CAACTTCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 579569 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||||| || |||| ||| || || |||||| ||||||||||| || Sbjct 580255 CATACCTCCTCGCAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTC 580196 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | ||| || | || ||||||||||| || || ||||| | ||||||||||||| Sbjct 580195 AGAGAGGGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGATCTGG 580136 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | |||||||| || ||||| ||| | | | ||||| |||| | || Sbjct 580135 GGGAATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTC 580076 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| || || || || || || | |||||||||||||| ||||| Sbjct 580075 AACTTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAGATCTGCAT 580025 Score = 109 bits (120), Expect = 4e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| |||| || |||| ||| || || |||||| ||||| ||||| || Sbjct 578834 CATACCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATATTGTAGTC 578775 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || | || ||||||||||| || || ||||| | |||||||| |||| Sbjct 578774 GGAGAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGG 578715 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | ||||| || || || || |||| | |||| | ||||| || | | | Sbjct 578714 GGGAATTCCTTCTTTATCTTGGAT-TTTGGCTTTTACGTTCTCGATGGTATCAGAAGGCT 578656 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || || |||||||| || |||||||||||||| || ||||| Sbjct 578655 CAACTTCCAATGTGATGGTCTTTCCTGTTAGGGTCTTCACGAAAATCTGCAT 578604 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| |||| || |||| ||| || ||| ||| || ||||||||||| || Sbjct 579062 CATACCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 579003 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || ||||||||||| || || ||||| | |||||||| |||| Sbjct 579002 AGACAGAGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATGAGTCGCTGCTGGTCTGG 578943 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | |||||||| || ||||| || | || ||| | || || || | | | Sbjct 578942 AGGAATTCCTTCCTTATCTTGGATCTT-GGCCTTAACATTCTCAATAGTATCAGATGGCT 578884 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || |||| || || || ||||| || ||||| ||||||||||| ||||| Sbjct 578883 CAACTTCCAAGGTGATGGTTTTTCCTGTAAGGGTTTTCACGAAGATCTGCAT 578832 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| |||| || |||| ||| || || |||||| ||||||||||| || Sbjct 578606 CATACCTCCTCGAAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTC 578547 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || | || ||||| ||||| || || ||||| | |||||||| |||| Sbjct 578546 GGAGAGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGG 578487 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| || ||||| ||| | | | ||||| |||| | || Sbjct 578486 AGGAATTCCTTCCTTATCTTGAATCTTAGCCTTGACATTCTCAATGGTATCGGATGGCTC 578427 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || || | || || || || || || | |||||||||||||| ||||| Sbjct 578426 AACTTCTAAAGTGATAGTTTTACCAGTCAATGTCTTCACGAAGATCTGCAT 578376 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| ||||||||||| || | || || | || || |||||||| || || ||| Sbjct 580443 TCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAG 580384 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGC-TTCAATGT 44265 || | |||||||| |||| ||| | |||||||| || | | ||| || || | | Sbjct 580383 ATAAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTATCT-TGAACTTTAGCCTTGACATT 580325 Query 44266 TCCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | ||||| || | | || ||||||| ||||| |||||||| || ||||||||||| Sbjct 580324 TTCAATGGTATCAGATGGCTCAACCTCCAAGGTAATTGTCTTTCCTGTTAGGGTCTTCAC 580265 Query 44326 GAAGATTTGCAT 44337 ||| || ||||| Sbjct 580264 GAAAATCTGCAT 580253 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| |||| || |||| ||| || || |||||| ||||||||||| || Sbjct 578378 CATACCTCCTCGTAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTC 578319 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 || ||| || | || ||||||||||| || || ||||| | |||||||| |||| Sbjct 578318 GGAGAGGGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGG 578259 Query 44227 AGGCACACCTTCCTT 44241 ||| | |||||||| Sbjct 578258 AGGAATTCCTTCCTT 578244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| |||| || |||| ||| || ||| ||| || ||||||||||| || Sbjct 580027 CATACCTCCTCGTAGTCGCAGGACCAAGTGGAGGGTGGACTCTTTCTGGATGTTGTAGTC 579968 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || ||||| ||||| || || ||||| | |||||||| |||| Sbjct 579967 AGACAGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAAGATGAGTCGCTGCTGGTCTGG 579908 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 ||| | |||||||| || || || ||| | | | ||||| || | | || Sbjct 579907 AGGAATTCCTTCCTTATCTTGAATTTTGGCCTTGACATTCTCAATGGTATCAGATGGCTC 579848 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || |||| || || || || || || | ||||||||||| || ||||| Sbjct 579847 AACTTCCAAAGTGATGGTTTTACCGGTCAATGTCTTCACGAAAATCTGCAT 579797 >seq1475 Length=480095 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/196 (71%), Gaps = 1/196 (1%) Strand=Plus/Plus Query 44148 CCTTT-TGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 ||||| || || ||||| || | ||| ||| | || || | ||| || |||||||| Sbjct 62652 CCTTTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAA 62711 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 |||| |||||||| |||| || | || ||||| ||| |||||| ||| | || Sbjct 62712 ATCAGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCCTGTATCTTTGCCTTGACATTT 62771 Query 44267 CCTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | || ||||| | | || ||||| | ||||| || || ||||||||||| ||||| Sbjct 62772 TCAATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACA 62831 Query 44327 AAGATTTGCATGATGT 44342 || ||||||||| ||| Sbjct 62832 AAAATTTGCATGTTGT 62847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359721146305290