Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq154 150 4e-31 seq1481 122 2e-22 >seq154 Length=1683969 Score = 150 bits (166), Expect = 4e-31 Identities = 156/202 (77%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || |||||||| || || ||| | ||||| || || || Sbjct 580256 CAGATTTTCGTGAAGACCCTAACAGGAAAGACAATTACCTTGGAGGTTGAGCCATCTGAT 580315 Query 177984 ACCATCGAGAACGTCAA-ACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||| || || ||||| | |||| |||| || || |||||||| ||||| |||||||| Sbjct 580316 ACCATTGAAAATGTCAAGGCTAAAG-TTCAAGATAAGGAAGGAATTCCTCCAGACCAGCA 580374 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 |||||||||||||| ||||| ||||| || ||||| | || ||| | || || ||| | Sbjct 580375 GCGACTTATCTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACCCTTTCGGACTACAACAT 580434 Query 178103 CCAAAAAGAATCAACACTGCAT 178124 ||| || ||||| ||||| ||| Sbjct 580435 CCAGAAGGAATCTACACTTCAT 580456 Score = 145 bits (160), Expect = 2e-29 Identities = 156/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || ||||||||||| |||||| | || || || || || Sbjct 578835 CAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGAGCCATCTGAT 578894 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| || || || |||||||| ||||| |||||||| Sbjct 578895 ACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAGCAG 578954 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| ||||| ||||| |||||||| | ||||| | || || ||| || Sbjct 578955 CGACTCATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACTCTGTCTGACTACAACATC 579014 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 579015 CAGAAAGAGTCCACCCTCCA-CTTG 579038 Score = 141 bits (156), Expect = 2e-28 Identities = 155/205 (76%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || || |||||||| || ||||| | || || || || || Sbjct 578607 CAGATTTTCGTGAAGACCCTAACAGGAAAGACCATCACATTGGAAGTTGAGCCTTCTGAT 578666 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||||||||| ||| || || || || ||||||||||| || || |||||||| Sbjct 578667 ACCATCGAGAACGTAAAAGCCAAAATCCAAGATAAAGAAGGAATTCCCCCAGACCAGCAG 578726 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || || ||||| |||||||| | || || |||| || || || Sbjct 578727 CGACTCATCTTCGCTGGTAAGCAGCTGGAAGATGGCCGTACCCTCTCCGACTACAATATC 578786 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||| || || |||| Sbjct 578787 CAGAAGGAGTCAACCCTCCA-CTTG 578810 Score = 136 bits (150), Expect = 1e-26 Identities = 154/205 (75%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||||||||| || ||||||||||| |||||| | || || || || || Sbjct 579572 CAGATCTTCGTGAAAACCCTTACAGGAAAAACCATCACCTTGGAAGTTGAGCCATCCGAT 579631 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || || ||||| || || || |||||||| ||||| |||||||| Sbjct 579632 ACTATTGAGAATGTTAAGGCCAAGATCCAAGATAAGGAAGGAATTCCTCCAGACCAGCAG 579691 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || |||||||| |||||||| | || || | || || ||| || Sbjct 579692 CGACTCATCTTCGCTGGTAAACAGCTGGAAGATGGCCGTACCCTCTCTGACTACAACATC 579751 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || || || || || |||| Sbjct 579752 CAGAAGGAGTCGACCCTCCA-CTTG 579775 Score = 127 bits (140), Expect = 5e-24 Identities = 152/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || | || || ||||| ||||| | || || || || || Sbjct 580028 CAGATCTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCCGAT 580087 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| |||||||| || || |||||||| || || || ||||| Sbjct 580088 ACCATTGAGAATGTCAAGGCTAAGATTCAAGATAAGGAAGGAATTCCCCCAGATCAGCAG 580147 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||||||| ||||| ||||| |||||||| | || || | || || ||| || Sbjct 580148 CGACTTATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTACAACATC 580207 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || || || ||||| || || |||| Sbjct 580208 CAGAAGGAGTCAACCCTCCA-CTTG 580231 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||| || | || || ||||| ||||| | || || || || || Sbjct 579800 CAGATTTTCGTGAAGACATTGACCGGTAAAACCATCACTTTGGAAGTTGAGCCATCTGAT 579859 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||| ||||| || ||||| || || |||||||| ||||| |||||||| Sbjct 579860 ACCATTGAGAATGTCAAGGCCAAAATTCAAGATAAGGAAGGAATTCCTCCAGACCAGCAG 579919 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||| |||||||| || || || || |||||||| | || || | || || ||| || Sbjct 579920 CGACTCATCTTCGCTGGTAAGCAACTGGAAGATGGCCGTACCCTGTCTGACTACAACATC 579979 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 || ||||| || || || || |||| Sbjct 579980 CAGAAAGAGTCCACCCTCCA-CTTG 580003 Score = 100 bits (110), Expect = 7e-16 Identities = 90/112 (80%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 178017 AAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGAT 178076 || |||||||| ||||| |||||||| |||||||||||||| ||||| ||||| |||||| Sbjct 578244 AAGGAAGGAATTCCTCCAGACCAGCAGCGACTTATCTTCGCTGGAAAGCAGCTGGAAGAT 578303 Query 178077 GGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || | || || |||| || ||| |||| || || ||||| || || |||| Sbjct 578304 GGCCGTACCCTCTCCGACTACAACATCCAGAAGGAGTCAACCCTCCA-CTTG 578354 >seq1481 Length=432034 Score = 122 bits (134), Expect = 2e-22 Identities = 120/155 (77%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || ||||||||||||||||| || | ||||| || ||| ||| Sbjct 233951 CAGATTTTTGTAAAGACGCTCACAGGAAAAACGATTACGTTGGAGGTAGAGCCCTCTGAC 233892 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||||| ||||| ||||| || ||||| || ||||| Sbjct 233891 ACGATCGAGAATGTTAAGGCGAAGATTCAAGACAAGGAAGGGATTCCTCCTGATCAGCAG 233832 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 || || ||||| ||||| || ||| | |||||||| Sbjct 233831 CGCCTGATCTTTGCCGGGAAGCAGTTAGAAGATGG 233797 Score = 109 bits (120), Expect = 1e-18 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 177978 TCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGAC 178037 || || || || || ||||| || ||||| || ||||||||||||||||| || ||| Sbjct 222265 TCTGATACAATTGAAAACGTGAAGGCTAAGATCCAAGACAAAGAAGGAATCCCCCCAGAC 222206 Query 178038 CAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTAT 178097 ||||| || | || || || ||||||||| | |||||||| | || ||| | ||||| Sbjct 222205 CAGCAGAGATTGATTTTTGCAGGAAAACAGTTGGAAGATGGTCGCACACTTTCTGATTAC 222146 Query 178098 AACGTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||| | ||||| || || ||||| || ||||| || | || ||| Sbjct 222145 AACATTCAAAAGGAGTCCACACTTCACCTTGTGCTGCGTCTGAGA 222101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202784702395780