Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Homalodisca_20vitripennis_20[genbank_20GCA_5F000696855.1_202014-06- 05] 61,370 sequences; 2,246,365,390 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1481 100 3e-16 seq1475 93.3 4e-14 seq154 93.3 4e-14 >seq1481 Length=432034 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 || ||||| || ||||| || | || || | || || | |||||| ||||| || ||| Sbjct 233767 TTTTGAATATTGTAGTCCGACAACGTTCGGCCATCTTCTAACTGCTTCCCGGCAAAGATC 233826 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 |||||||| || || | |||| | |||||||| ||| | || || | ||| | Sbjct 233827 AGGCGCTGCTGATCAGGAGGAATCCCTTCCTTGTCT-TGAATCTTCGCCTTAACATTCTC 233885 Query 41795 -ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | ||||| | ||| ||||||| ||| |||||||| || || ||||||||||| || Sbjct 233886 GATCGTGTCAGAGGGCTCTACCTCCAACGTAATCGTTTTTCCTGTGAGCGTCTTTACAAA 233945 Query 41854 AATCTGCATGTT 41865 |||||||||||| Sbjct 233946 AATCTGCATGTT 233957 >seq1475 Length=480095 Score = 93.3 bits (102), Expect = 4e-14 Identities = 139/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| || || ||||| ||||| || ||| | || || | ||| || ||||| || ||| Sbjct 62655 TTCTGTATATTGTAGTCAGAGAGAGTACGCCCATCTTCTAACTGTTTACCGGCAAAAATC 62714 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 || ||||| ||||| | ||| | | |||||| ||| || | ||||| | || | Sbjct 62715 AGTCGCTGCTGGTCTGGGGGGATTCCCTCCTTATCC-TGTATCTTTGCCTTGACATTTTC 62773 Query 41795 AC-AGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAA 41853 | |||||| | ||| ||||| | || || ||||||||||| || || || || || Sbjct 62774 AATAGTGTCTGATGGCTCGACCTCAAGGGTAATGGTTTTACCCGTGAGGGTTTTCACAAA 62833 Query 41854 AATCTGCATGTTATC 41868 ||| |||||||| || Sbjct 62834 AATTTGCATGTTGTC 62848 >seq154 Length=1683969 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| || || |||||||||||||| || | || || |||||||| || ||||| Sbjct 578795 CTCCTTCTGGATATTGTAGTCGGAGAGGGTACGGCCATCTTCCAGCTGCTTACCAGCGAA 578736 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG- 41789 || || ||||| ||||| | ||||| | || ||| | || |||| |||| ||| Sbjct 578735 GATGAGTCGCTGCTGGTCTGGGGGAATTC-CTTCTTTATCTTGGATTTTGGCTTTTACGT 578677 Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | || || | ||| || |||| || || || || || || || ||||| | Sbjct 578676 TCTCGATGGTATCAGAAGGCTCAACTTCCAATGTGATGGTCTTTCCTGTTAGGGTCTTCA 578617 Query 41850 CGAAAATCTGCAT 41862 ||||||||||||| Sbjct 578616 CGAAAATCTGCAT 578604 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 41730 ||||||||| ||||| |||||||||||||| || | || || || ||||| || ||||| Sbjct 578567 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTACGGCCATCTTCCAGTTGCTTACCAGCGAA 578508 Query 41731 TATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACG 41789 || || ||||| ||||| | |||| | ||||| | | ||| | || | ||| | Sbjct 578507 GATGAGTCGCTGCTGGTCTGGAGGAATTCCTTCCTTAT-CTTGAATCTTAGCCTTGACAT 578449 Query 41790 ACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTA 41849 | | || ||| | ||| || || | || || |||||||| |||| ||||| | Sbjct 578448 TCTCAATGGTATCGGATGGCTCAACTTCTAAAGTGATAGTTTTACCAGTCAATGTCTTCA 578389 Query 41850 CGAAAATCTGCAT 41862 |||| |||||||| Sbjct 578388 CGAAGATCTGCAT 578376 Score = 84.2 bits (92), Expect = 2e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || ||||| || | |||| || || || ||||||||| ||||| ||||||||| Sbjct 578374 CCTCCTCGTAGTCGCAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCGGAG 578315 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || | || || |||||||| || ||||| || || ||||| ||||| | ||| Sbjct 578314 AGGGTACGGCCATCTTCCAGCTGCTTTCCAGCGAAGATAAGTCGCTGCTGGTCTGGAGGA 578255 Query 41756 A 41756 | Sbjct 578254 A 578254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 461949355044000