Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq9457 134 3e-26 seq12292 105 1e-17 seq10114 100 6e-16 seq14635 98.7 2e-15 seq13891 98.7 2e-15 seq13825 98.7 2e-15 seq11560 98.7 2e-15 seq9415 98.7 2e-15 >seq9457 Length=55282 Score = 134 bits (148), Expect = 3e-26 Identities = 286/425 (67%), Gaps = 4/425 (1%) Strand=Plus/Plus Query 61079 TCGAATTTGTCAAGCATCAACATCTGAACTGTATGGAAAAGTTCAAGAAATTCCTCAAAC 61138 ||| |||| |||||| || || ||||| || || || ||| ||||| | || || | Sbjct 33460 TCGCATTTATCAAGCCTCTACCTCTGAGCTATACGGCTTAGTACAAGAGGTGCCGCAGTC 33519 Query 61139 AGAAAGGACTCCGTTTTATCCTCGTAGCCCGTATGGTGTTGCAAAACTATACGCTTACTG 61198 |||| ||||| |||||||| | || |||| || || ||| |||| | ||||| Sbjct 33520 TGAAACCACTCCATTTTATCCAAGGTCTCCTTATGCAGTAGCCAAATTATATGGCTACTG 33579 Query 61199 GATTTGTAAAAATTACCGCGAGTCGTATGGAATGTTTGTATGTAACTCGATTTGTTTCAA 61258 |||| ||| || ||||| | || |||| || || || || ||||| Sbjct 33580 GATTACAGTAAACTATCGCGAAGCTTACAACATGTATGCTTGCAATGGCATCCTATTCAA 33639 Query 61259 TCACGAGAGTCCCAATAGAGGTCATCAGTTTGTGACTCGTAAAATTACGAAGGCGGTTGC 61318 ||||| || ||||| | || ||||| |||||||| || | ||| ||| | Sbjct 33640 CCACGAATCGCCTTTGAGAGGCGAAACCTTCGTGACACGTAAAATCACTAGGGCAGTTTC 33699 Query 61319 A--AATATTTTTAACGGTGTCGAAAAATGCATGTATCTAGGAAACATAGACTCTAAAAGA 61376 | |||| ||| ||| ||| |||| ||| ||| ||||| | || | |||||| Sbjct 33700 ACAAATAGCCTTA--GGTCAGGAAGAATGTCTGTTTCTTGGAAATCTCGATGCCAAAAGA 33757 Query 61377 GATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGATACT 61436 || ||||| |||| |||| || || ||||| ||||||||||| ||||||||||| Sbjct 33758 GACTGGGGTCATGCCAAAGACTACATTGAGGCCATGTGGTTGATCTTGCAACAAGACGTG 33817 Query 61437 CCAGATGACTACGTTATTGCGACTGGACAGACGACGAGTGTCCGTGAATTCGTAAAAATA 61496 | || || || |||||||| ||||| || || | || ||||| || |||||||| Sbjct 33818 GCGGAAGATTATGTTATTGCTACTGGTATTACCACCACCGTTCGTGATTTTGTAAAAATG 33877 Query 61497 GCGTT 61501 || || Sbjct 33878 GCCTT 33882 >seq12292 Length=257813 Score = 105 bits (116), Expect = 1e-17 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 165704 ACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGT 165763 |||| |||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||| Sbjct 232482 ACGCATGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGT 232423 Query 165764 TCGAGCCCCACGATGGGC 165781 |||||||||||| ||||| Sbjct 232422 TCGAGCCCCACGTTGGGC 232405 >seq10114 Length=835518 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||||||| Sbjct 54692 TGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 54751 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 54752 CCCCACGTTGGGC 54764 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||||||| Sbjct 57534 TGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 57593 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 57594 CCCCACGTTGGGC 57606 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| | ||||| ||||||| | ||||||||||||||| Sbjct 58693 TGCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAG 58752 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 58753 CCCCACGTTGGGC 58765 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 53015 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 53074 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 53075 CCCACGTTGGGC 53086 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 53555 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 53614 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 53615 CCCACGTTGGGC 53626 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 59246 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 59305 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 59306 CCCACGTTGGGC 59317 >seq14635 Length=198898 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 84447 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 84388 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 84387 CCCACGTTGGGC 84376 >seq13891 Length=681442 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 89982 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 89923 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 89922 CCCACGTTGGGC 89911 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 91177 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 91236 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 91237 CCCACGTTGGGC 91248 >seq13825 Length=215416 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 35418 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 35477 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 35478 CCCACGTTGGGC 35489 >seq11560 Length=285289 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 188274 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 188333 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 188334 CCCACGTTGGGC 188345 >seq9415 Length=406601 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| | ||||| ||||||| | |||||||||||||||| Sbjct 171588 GCCCGGCTAGCTCAGTCGGTAGAGCACGAGACTCTTAATCTCGGGGTCGTGGGTTCGAGC 171647 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 171648 CCCACGTTGGGC 171659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057580039340000