Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq16236 111 1e-19 seq9774 111 1e-19 >seq16236 Length=166078 Score = 111 bits (122), Expect = 1e-19 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 18897 ATAGATACAATTAAAACAAA-CCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCC 18955 || || | ||| || ||||| |||| | | ||| || ||||| | || ||||||| || Sbjct 14720 ATTGAAAGAATCAAGACAAATCCCACAGA-CCGCCGTTTGATTTTGTCTGCTTGGAACCC 14778 Query 18956 AAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGC 19015 | || ||||| ||||| ||| ||||| || || || ||||||||||||||||| Sbjct 14779 AGCTGACATCCCTGAAATGGCACTGCCTCCCTGCCATTGCTTGTGTCAGTTTTACGTTGC 14838 Query 19016 AAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACC 19075 || || || | || || || | |||||| |||| | || |||||||| || || || Sbjct 14839 CAATGGCGAGCTGTCTTGTCAGCTGTACCAGCGATCTGCTGACATGGGCCTCGGTGTGCC 14898 Query 19076 GTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || ||||| || | ||||| || || |||| ||| | || || || || || ||||| Sbjct 14899 ATTTAACATCGCCAGCTATGCTCTGCTCACCTGCATGATCGCTCAGGTCACCGGCCTTAA 14958 >seq9774 Length=82367 Score = 111 bits (122), Expect = 1e-19 Identities = 170/240 (71%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 18897 ATAGATACAATTAAAACAAA-CCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCC 18955 || || | ||| || ||||| |||| | | ||| || ||||| | || ||||||| || Sbjct 81138 ATTGAAAGAATCAAGACAAATCCCACAGA-CCGCCGTTTGATTTTGTCTGCTTGGAACCC 81080 Query 18956 AAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGC 19015 | || ||||| ||||| ||| ||||| || || || ||||||||||||||||| Sbjct 81079 AGCTGACATCCCTGAAATGGCACTGCCTCCCTGCCATTGCTTGTGTCAGTTTTACGTTGC 81020 Query 19016 AAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACC 19075 || || || || || || || | |||||| |||| | || ||| |||| || || || Sbjct 81019 CAATGGCGAGTTGTCTTGTCAGCTGTACCAGCGATCTGCTGACATGAGCCTCGGCGTGCC 80960 Query 19076 GTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 || ||||| || | ||||| || || |||| ||| | || || || || || ||||| Sbjct 80959 ATTTAACATCGCCAGCTATGCTCTGCTCACCTGCATGATTGCTCAGGTCACCGGCCTTAA 80900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399416358810000