Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq16236 120 2e-22 seq9774 114 9e-21 >seq16236 Length=166078 Score = 120 bits (132), Expect = 2e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 ||||| ||||| |||||||| || | |||| |||||| || |||||||||||||| || Sbjct 14949 GTGACCTGAGCGATCATGCAGGTGAGCAGAGCATAGCTGGCGATGTTAAATGGCACACCG 14890 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 | ||||| ||||| |||| || ||||| ||||| || |||| |||| || ||| Sbjct 14889 AGGCCCATGTCAGCAGATCGCTGGTACAGCTGACAAGACAGCTCGCCATTGGCAACGTAA 14830 Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAA 101932 || |||| || ||| || || |||| |||||| ||| ||||| | |||||| Sbjct 14829 AACTGACACAAGCAATGGCAGGGAGGCAGTGCCATTTCAGGGATGTCAGCTGGGTTCCAA 14770 Query 101933 GCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTG 101988 ||| ||| | || | | ||||| || ||||| || || | ||||| | ||| Sbjct 14769 GCAGACAAAATCAAACGGCGGTCTGTGGGATTTGTCTTGATTCTTTCAATGAGCTG 14714 >seq9774 Length=82367 Score = 114 bits (126), Expect = 9e-21 Identities = 167/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 ||||| |||||||||||||| || | |||| |||||| || |||||||||||||| || Sbjct 80909 GTGACCTGAGCAATCATGCAGGTGAGCAGAGCATAGCTGGCGATGTTAAATGGCACGCCG 80968 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 | | ||| ||||| |||| || ||||| ||||| || | || |||| || ||| Sbjct 80969 AGGCTCATGTCAGCAGATCGCTGGTACAGCTGACAAGACAACTCGCCATTGGCAACGTAA 81028 Query 101873 AATTGACTTAATACATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAA 101932 || |||| || ||| || || |||| |||||| ||| ||||| | |||||| Sbjct 81029 AACTGACACAAGCAATGGCAGGGAGGCAGTGCCATTTCAGGGATGTCAGCTGGGTTCCAA 81088 Query 101933 GCACACATTAACATCCTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTG 101988 ||| ||| | || | | ||||| || ||||| || || | ||||| | ||| Sbjct 81089 GCAGACAAAATCAAACGGCGGTCTGTGGGATTTGTCTTGATTCTTTCAATGATCTG 81144 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361171950518000