Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq16236 136 5e-27 seq9774 123 3e-23 >seq16236 Length=166078 Score = 136 bits (150), Expect = 5e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| || |||| |||| |||| ||||| | |||||||| ||||| || ||| Sbjct 14955 AGGCCGGTGACCTGAGCGATCATGCAGGTGAGCAGAGCATAGCTGGCGATGTTAAATGGC 14896 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| | || |||||||||||||| || || ||||| || || Sbjct 14895 ACACCGAGGCCCATGTCAGCAGATCGCTGGTACAGCTGACAAGACAGCTCGCCATTGGCA 14836 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929 ||||| ||||| |||| | |||||||| ||||| ||||| | || | ||| || ||| Sbjct 14835 ACGTAAAACTGACACAAGCAATGGCAGGGAGGCAGTGCCATTTCAGGGATGTCAGCTGGG 14776 Query 145930 TTCCAGGC 145937 ||||| || Sbjct 14775 TTCCAAGC 14768 >seq9774 Length=82367 Score = 123 bits (136), Expect = 3e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 ||||| |||| || || | |||| |||| ||||| | |||||||| ||||| || ||| Sbjct 80903 AGGCCGGTGACCTGAGCAATCATGCAGGTGAGCAGAGCATAGCTGGCGATGTTAAATGGC 80962 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || | |||||| | || |||||||||||||| || || | ||| || || Sbjct 80963 ACGCCGAGGCTCATGTCAGCAGATCGCTGGTACAGCTGACAAGACAACTCGCCATTGGCA 81022 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGG 145929 ||||| ||||| |||| | |||||||| ||||| ||||| | || | ||| || ||| Sbjct 81023 ACGTAAAACTGACACAAGCAATGGCAGGGAGGCAGTGCCATTTCAGGGATGTCAGCTGGG 81082 Query 145930 TTCCAGGC 145937 ||||| || Sbjct 81083 TTCCAAGC 81090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589944032720000