Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1448 132 5e-26 seq10358 123 3e-23 seq9360 113 5e-20 seq9661 111 2e-19 >seq1448 Length=175156 Score = 132 bits (146), Expect = 5e-26 Identities = 117/146 (80%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 ||||| || || ||||| ||||| | ||||| ||||| ||| ||| | || || ||| Sbjct 97888 GTGGCGTTTGCCGCCGTGGAGGGGATTTTCTTCTCGGGTTCTTTTGCCTCAATTTTCTGG 97829 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 || ||||| || ||||||||||| || |||||||| |||||||||||||||||| | ||| Sbjct 97828 CTGAAGAAGCGAGGCCTCATGCCGGGTCTGACTTTTAGCAACGAGCTCATCTCCCGTGAC 97769 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTG 117189 ||||| ||||| ||||||||||| Sbjct 97768 GAGGGCCTGCACACTGACTTTGCCTG 97743 Score = 107 bits (118), Expect = 2e-18 Identities = 131/176 (74%), Gaps = 6/176 (3%) Strand=Plus/Minus Query 116828 CAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCG 116887 |||||| | || || || |||||||||||||| |||||||||||||||||| | ||||| Sbjct 99566 CAGGTGCCTGAAGCTCGCTGCTTCTACGGCTTCCAGATCGCCATGGAGAACATCCACTCT 99507 Query 116888 GAAATGTATTCGACCCTCATCGACACGTACGT-GC--GCTCTTCGGAGGAGAAGCTCCGT 116944 || ||||| ||| ||| |||| ||| | || | | | || ||| || || Sbjct 99506 GAGATGTACAGCCTCCTGATCAACACCTACATCGCCGACACCGCCCAGCAGACGCGCC-- 99449 Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCT 117000 | || |||||||||||||| ||||| ||| |||| ||||||| || ||||| || Sbjct 99448 -TCTTTAACGCCATCGAGACCATGCCCTGCATCAAGAAGAAGGCAGACTGGGCCCT 99394 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 |||||||||||||| |||||||||| |||||| || ||| | || || || ||||| || Sbjct 101373 GAGCCGCTGCTGCGGGAGAACCCCCACCGGTTTGTTATTCTACCAATCCAGTACCCCGAG 101314 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || | | ||||| || || |||| ||| || |||||||| || |||||||| ||| || Sbjct 101313 ATTTTCCAGATGTATAAGAAAGCCGTGGCATCCTTCTGGACAGTTGAGGAGGTTGACTTG 101254 Query 116696 TCCAAGG 116702 ||||| Sbjct 101253 AGCAAGG 101247 >seq10358 Length=34033 Score = 123 bits (136), Expect = 3e-23 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 ||||| || || || || ||||| | ||||| ||||| ||| || | || || ||| Sbjct 253 GTGGCGTTTGCCGCAGTGGAGGGGATTTTCTTCTCGGGATCTTTTGCTTCGATTTTCTGG 194 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 || ||||| |||||||||||||| || |||||||||||||||||||||||||| | || Sbjct 193 CTGAAGAAGCGCGGCCTCATGCCGGGTCTGACTTTCAGCAACGAGCTCATCTCACGTGAT 134 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTG 117189 ||||| ||||| ||||||||||| Sbjct 133 GAGGGCCTGCACACTGACTTTGCCTG 108 >seq9360 Length=410125 Score = 113 bits (124), Expect = 5e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || || || ||| || Sbjct 230590 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGGCCTCC 230649 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| ||||||| || || || || ||||| | || || Sbjct 230650 GATACCATCGAGAACG-TGAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCCGATCA 230708 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || || |||| || ||||| ||| |||| || | |||||||| ||||||||| Sbjct 230709 ACAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAA 230768 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||||||| | || || || | ||| | || || |||| ||| Sbjct 230769 CATCCAGAAGGAGTCTACCCTCCACTTGGTGCTACGTCTGCGGGGTGGC 230817 >seq9661 Length=48700 Score = 111 bits (122), Expect = 2e-19 Identities = 149/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || || || ||||| ||||| ||| | || || || ||| | Sbjct 32046 AATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCTTGGAGGTGGAGGCCTC 31987 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 || | | | | |||| | |||| || |||| || || || |||||||| | |||| Sbjct 31986 TGATACCATCGAGAACG-TGAAGGCGAAGATTCAAGATAAGGAAGGCATCCCTCCCGACC 31928 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 | || || ||||||| || || || ||| |||| |||| || ||||| |||||||| Sbjct 31927 AACAGCGTCTCATCTTTGCTGGTAAGCAGTTGGAGGACGGTCGAACCCTTTCCGACTACA 31868 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||| |||||| | || || || Sbjct 31867 ACATCCAAAAGGAGTCAACCCTCCA 31843 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| || |||||| | || || || ||| | Sbjct 31817 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACTATCACCTTGGAGGTGGAGGCCTCG 31758 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | | |||| || || | || || || |||||||| | ||||| Sbjct 31757 GATACCATCGAGAATGTGAAGGCGAAGATCCAAGATAAGGAAGGCATCCCTCCCGACCAA 31698 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||| | || || | || ||||| |||||||||| Sbjct 31697 CAGCGTCTTATCTTTGCTGGCAAGCAGTTAGAGGATGGCCGAACCCTTTCCGACTACAAC 31638 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 ||||| |||||| | || || || Sbjct 31637 ATCCAAAAGGAGTCTACCCTCCA 31615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515103275680000