Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq8262 129 7e-25 seq11448 125 8e-24 seq1003 123 3e-23 seq10859 116 4e-21 seq15779 111 2e-19 seq7683 111 2e-19 seq12292 102 9e-17 seq3669 95.1 1e-14 >seq8262 Length=289 Score = 129 bits (142), Expect = 7e-25 Identities = 85/94 (90%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 188 ATCAAAAATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 129 Query 60114 TACTCACCACTATACTACCGAGGATTGAATATAT 60147 |||||||||||||||||||||||| ||| |||| Sbjct 128 TACTCACCACTATACTACCGAGGAGTGACGATAT 95 >seq11448 Length=766531 Score = 125 bits (138), Expect = 8e-24 Identities = 83/92 (90%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 60051 TTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGG 60110 ||| | ||| ||||||||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 395296 TTTCTAAAATATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGG 395355 Query 60111 ACATACTCACCACTATACTACCGAGGATTGAA 60142 ||||||||||||||||||||||||| |||| Sbjct 395356 GGATACTCACCACTATACTACCGAGGAGTGAA 395387 >seq1003 Length=166183 Score = 123 bits (136), Expect = 3e-23 Identities = 76/81 (94%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||||||||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 72588 AAAAATTTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 72647 Query 60117 TCACCACTATACTACCGAGGA 60137 ||||||||||||||||||||| Sbjct 72648 TCACCACTATACTACCGAGGA 72668 Score = 123 bits (136), Expect = 3e-23 Identities = 95/110 (86%), Gaps = 2/110 (2%) Strand=Plus/Minus Query 60054 ATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 || ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 74461 ATTAAAAACATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 74402 Query 60114 TACTCACCACTATACTACCGAGGATTGAATATATAACTTGAATATTACAA 60163 |||||||||||||||||||||||| || ||||| ||| |||| || ||| Sbjct 74401 TACTCACCACTATACTACCGAGGAGTG-ATATA-AACCTGAAATTTTCAA 74354 Score = 118 bits (130), Expect = 1e-21 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 ||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 118751 AAAATATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 118692 Query 60118 CACCACTATACTACCGAGGA 60137 |||||||||||||||||||| Sbjct 118691 CACCACTATACTACCGAGGA 118672 Score = 114 bits (126), Expect = 1e-20 Identities = 75/83 (90%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 120505 AAAAACTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 120564 Query 60118 CACCACTATACTACCGAGGATTG 60140 |||||||||||||||||||| || Sbjct 120565 CACCACTATACTACCGAGGACTG 120587 Score = 113 bits (124), Expect = 5e-20 Identities = 77/87 (89%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 120203 AAAAGCTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 120262 Query 60118 CACCACTATACTACCGAGGATTGAATA 60144 |||||||||||||||||||| ||| || Sbjct 120263 CACCACTATACTACCGAGGAGTGATTA 120289 >seq10859 Length=313708 Score = 116 bits (128), Expect = 4e-21 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 60054 ATGAAAAAT-TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 || ||| || ||||||| |||| ||||||||||||| ||||||||||||||||||||| Sbjct 176696 ATAAAATATATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 176755 Query 60113 ATACTCACCACTATACTACCGAGGATTGA 60141 ||||||||||||||||||||||||| ||| Sbjct 176756 ATACTCACCACTATACTACCGAGGAGTGA 176784 >seq15779 Length=1152238 Score = 111 bits (122), Expect = 2e-19 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 559777 TTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 559718 Query 60124 TATACTACCGAGGA 60137 |||||||||||||| Sbjct 559717 TATACTACCGAGGA 559704 >seq7683 Length=315 Score = 111 bits (122), Expect = 2e-19 Identities = 75/84 (89%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 60058 AAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACT 60117 |||| | |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| Sbjct 304 AAAAGCTCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACT 245 Query 60118 CACCACTATACTACCGAGGATTGA 60141 |||||||||||||||||||| ||| Sbjct 244 CACCACTATACTACCGAGGAGTGA 221 >seq12292 Length=257813 Score = 102 bits (112), Expect = 9e-17 Identities = 71/81 (88%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| | |||| ||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 223532 AAAAATGTCCTCCCAGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 223591 Query 60117 TCACCACTATACTACCGAGGA 60137 | |||||||||||||| |||| Sbjct 223592 TTACCACTATACTACCTAGGA 223612 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| ||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 223168 CTCCCAGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTTACCACTA 223227 Query 60126 TACTACCGAGGATTGA 60141 ||||||| |||| ||| Sbjct 223228 TACTACCTAGGAGTGA 223243 >seq3669 Length=503006 Score = 95.1 bits (104), Expect = 1e-14 Identities = 60/65 (92%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 285569 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 285510 Query 60126 TACTA 60130 ||||| Sbjct 285509 TACTA 285505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571688941040000