Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq9360 123 2e-23 seq9661 118 8e-22 seq10870 104 2e-17 >seq9360 Length=410125 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | || |||||||| || || ||||||||| |||||||||||| Sbjct 230817 GCCACCCCGCAGACGTAGCACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 230758 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 ||| |||| | || |||| || || || || || || | |||||||| |||||||| Sbjct 230757 CAGGGTGCGACCATCTTCCAACTGCTTGCCAGCAAAGATAAGACGCTGTTGATCGGGAGG 230698 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| || |||||| ||| || | | | | | || ||||||| Sbjct 230697 GATTCCTTCCTTATCTTGAATTTTGGCCTTCACGTTCTCGATGGTATCGGAGGCCTCCAC 230638 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| || || |||||||| ||||| |||||||||||||| ||||| Sbjct 230637 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 230590 >seq9661 Length=48700 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || || |||||| || |||||||||||| || ||| |||| || Sbjct 31836 TACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCGGAAAGGGTTCGACCGTCCTC 31895 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || || || || || || || | ||||||||||||||||| | || ||||| || Sbjct 31896 CAACTGCTTACCAGCAAAGATGAGACGCTGTTGGTCGGGAGGGATGCCTTCCTTATCTTG 31955 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || ||| || | | | | | || |||||||||||| |||||| ||||| Sbjct 31956 AATCTTCGCCTTCACGTTCTCGATGGTATCAGAGGCCTCCACCTCCAAGGTAATGGTCTT 32015 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||| |||||||| ||||| ||||| Sbjct 32016 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 32045 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 45109 GCCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTT 45168 |||||| | || | | ||||||||| || || |||||| || |||||||||||| Sbjct 31590 GCCACCACGCAGACGCAGTACCAAGTGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGGA 31649 Query 45169 CAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGG 45228 || || | || || | || || || || || || | ||||||||||||||||| Sbjct 31650 AAGGGTTCGGCCATCCTCTAACTGCTTGCCAGCAAAGATAAGACGCTGTTGGTCGGGAGG 31709 Query 45229 CACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCAC 45288 | || ||||| || || || ||| || | | | | | ||| ||||||| Sbjct 31710 GATGCCTTCCTTATCTTGGATCTTCGCCTTCACATTCTCGATGGTATCCGAGGCCTCCAC 31769 Query 45289 CTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||| || |||||||| ||||| |||||||| ||||| ||||| Sbjct 31770 CTCCAAGGTGATAGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 31817 >seq10870 Length=359794 Score = 104 bits (114), Expect = 2e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 || |||||||| ||||| ||||| || | | ||||||||| || || | ||| |||||| Sbjct 75538 TCTTCCAGTTGCTTTCCAGCGAAGATAAGTCTCTGTTGGTCAGGGGGAATACCTTCCTTG 75479 Query 45242 TCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATC 45301 ||| ||||||| || || | | |||| | |||||||||| | ||| || Sbjct 75478 TCCTGAATTTTTGCTTTGACATTTTCAATTGTGTCAGAAGCCTCCACCTCAAGGGTGATG 75419 Query 45302 GTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||| ||||| ||||||||||||||||| ||||| Sbjct 75418 GTCTTCCCCGTGAGAGTCTTCACAAAGATCTGCAT 75384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394988530378000