Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq1448 143 2e-29 seq9360 89.7 5e-13 seq15668 84.2 2e-11 seq10870 82.4 7e-11 >seq1448 Length=175156 Score = 143 bits (158), Expect = 2e-29 Identities = 139/179 (78%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 57955 CGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGG 58014 |||||| | ||| ||||| || | ||||| |||||||| || || || ||||| |||| Sbjct 97911 CGGCCAGTTACGCGGAGAGAATAGTGGCGTTTGCCGCCGTGGAGGGGATTTTCTTCTCGG 97852 Query 58015 GCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTA 58074 | ||||| |||| || ||| ||||||| || ||||| ||||| || ||||| |||| Sbjct 97851 GTTCTTTTGCCTCAATTTTCTGGCTGAAGAAGCGAGGCCTCATGCCGGGTCTGACTTTTA 97792 Query 58075 GCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTAC 58133 |||||||| | || || || |||||||| || || ||||| ||||| ||||| |||||| Sbjct 97791 GCAACGAGCTCATCTCCCGTGACGAGGGCCTGCACACTGACTTTGCCTGCCTCATGTAC 97733 >seq9360 Length=410125 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| ||||| ||||| || ||||| | || || || | ||| Sbjct 230590 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACTCTGGAGGTGGAGGCCTCC 230649 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | ||| || |||||||| | || ||||| || Sbjct 230650 GATACCATCGAGAACGTGAAGGCCAAAATTCAAGATAAGGAAGGAATCCCTCCCGATCAA 230709 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || |||||||| ||||||||||| | || || ||| || ||| Sbjct 230710 CAGCGTCTTATCTTTGCTGGCAAGCAGTTGGAAGATGGTCGCACCCTGTCCGACTACAAC 230769 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || || || || || || || |||| || | ||| |||| || Sbjct 230770 ATCCAGAAGGAGTCTACCCTCCACTTGGTGCTACGTCTGCGGGGTGG 230816 >seq15668 Length=647317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 |||||||| || | ||||| || || || || || || || ||||| || ||| Sbjct 303419 ACCTCGTCAAGAGAAGAGTACTGGACGATCTCCGTGCACAGGTTTGAGCACTTGATGGTG 303478 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 || | || |||||| || || || ||||| | || ||||||||||||||||||||| Sbjct 303479 CCGAGGTTTTGCTGGTTACTCTTGCGGTTGCAGGCGTCTTTGTAGAGCATGTACGGCGTG 303538 Query 23168 CCCGTCTCGACCTG 23181 || ||||||||||| Sbjct 303539 CCTGTCTCGACCTG 303552 >seq10870 Length=359794 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||| || || || || |||||| | || || || | || Sbjct 75384 ATGCAGATCTTTGTGAAGACTCTCACGGGGAAGACCATCACCCTTGAGGTGGAGGCTTCT 75443 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||| |||||| | ||| |||||||||||| | || || ||||| Sbjct 75444 GACACAATTGAAAATGTCAAAGCAAAAATTCAGGACAAGGAAGGTATTCCCCCTGACCAA 75503 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 ||| | || || |||||||| || || ||||||| Sbjct 75504 CAGAGACTTATCTTCGCTGGAAAGCAACTGGAAGA 75538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445666102560000