Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hyalella_20azteca_20[refseq_20GCF_5F000764305.1_202016-07-20] 18,000 sequences; 550,885,727 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq16548 428 2e-115 >seq16548 Length=1313 Score = 428 bits (474), Expect = 2e-115 Identities = 859/1256 (68%), Gaps = 33/1256 (3%) Strand=Plus/Minus Query 33393 TAGTAGTTTGCCTCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGA 33452 |||||| || || ||||| ||||||||||| | ||||| ||||| | ||| || | Sbjct 1240 TAGTAGGCAGCTTCCGCTTCGGCGGGCGGGATGTTGCCGATGGGTTCGAGCAGTCGGCGG 1181 Query 33453 TGGTTGTACCAGGCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCC---CTCGTTTTC 33509 |||||| ||||| ||||||| | |||||| ||| |||||| || | || | Sbjct 1180 TGGTTGAACCAGTCGACCCAGTTCAGCGTGGCCCACTCGACGTCGTCATGGCGCGG---C 1124 Query 33510 CAAGGGGCGCGCCGATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGC 33569 || | | || || ||||| | || | |||||| |||||| |||||| |||||||| Sbjct 1123 CAGGACGTCCGGCGGTGAATGACCTCGGCCTTGTAGAGGCCGATGATCGACTCGGCCAGG 1064 Query 33570 GCATTGTCGTAGCTGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGC 33629 || ||||||||| |||||| ||| ||||| || ||||| | ||| ||||| || ||| Sbjct 1063 GCGTTGTCGTAGGAGTCGCCGACGCTACCGACAGAAGGCTCCAGGCCAGCCTCCGCAAGC 1004 Query 33630 CGTTCGCTGTAGCGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTC 33689 || ||| |||| ||||| | || ||||| || || | |||| || ||||||| | Sbjct 1003 CGCTCGGTGTACCGAATCCCAACATATTGCGAACCGCGGTCGCTGTGGTGAATCAG---C 947 Query 33690 CCGTCCTCGCCC---GGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAG 33746 | ||| |||| || | |||||| |||||||| || || || ||||| || || ||| Sbjct 946 CGGTCGCCGCCGAAAGGCTTGCGGGCATACAGCGCCTGCTCCAGCGCATCGAGCACGAAG 887 Query 33747 TCCGT---GGTCATCGACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCG 33803 || || || | | |||| |||| ||||||| || || |||||||| | || ||| Sbjct 886 TCGGTTCGGGCCGAGGTCGAG--GACC-GCCAGCCGACGATCCGGCGGGCATAGACATCG 830 Query 33804 ATCACGAATGCCACGTACAGCCAGCCTTGCCATGTCGAGACATACGTAAAATCCGACACC 33863 || ||||| || ||||| ||||||| | |||||||| || || || || ||| Sbjct 829 ATGACGAAGGCGACGTAGGCAAAGCCTTGATAGGTCGAGACGTAAGTGAAGTCACTGACC 770 Query 33864 CAGAGCTGATTCGGTCGGTCAGCCTTGAACTGCCGGTTGACTCGGTCCAGCGGGCGCGGC 33923 || ||||| ||||| || || ||| |||||| || | ||| | || |||| |||| Sbjct 769 CACAGCTGGTTCGGCCGATCCGCCCGGAACTGGCGCTGGACGTGATCTCTAGGGCACGGC 710 Query 33924 GCGGTCACATCGGTAATCGTCGTGCGAACACGCTTACCGCGAACTGCGCCACGCAAGCCC 33983 || || | | | | |||||| || || ||| ||||| || |||| |||| ||| Sbjct 709 GCATTCGGCTGGCTGAGCGTCGTCCGCACGGTCTTGCCGCGCACCACGCCGCGCAGCCCC 650 Query 33984 T-GCAGCTTCATCAACCGTCCGACCGTGCAGCGTGCCACCGTAATGCCTTCCCGGTTCAT 34042 || || ||||| || ||||||||||||| ||||||| || | ||| |||| || Sbjct 649 ACGCGGCG-CATCAGTCGGGCGACCGTGCAGCGCGCCACCGCCATCCGTTCGCGGTGCAA 591 Query 34043 CTGCTTCCAGACCTTCGGCACGCCGTAGACCTGCATGTTGGCCTGCCAGACACGCTTGAT 34102 |||| ||||||||| | ||||| |||||| | | || | |||||| || | ||| Sbjct 590 CTGCCGCCAGACCTTGCGAACGCCATAGACCCGGAAATTCTCGGTCCAGACCCGTTCGAT 531 Query 34103 CTCCGGTTGCAAAAGCTCATCGCGTTTCGCGCGGGCGCAGCGTTTCGACGGATCGCGAAG 34162 || || ||| | ||||| || | || | | || || |||||| || Sbjct 530 TTCTGGCAGCAGCTGTTCATCCCGCCGTGTCCGCTCTGAACGCAGCGCCGGATCACGGCA 471 Query 34163 TTGTGCTGCATGGCGTCGGTAGCCCGACGGGGCAATCCGCAAGACCTTGCAGATCGGCTC 34222 | || |||||| |||| |||||| || ||| ||||||| |||||||||||| Sbjct 470 CCGGGCCGCATGGGTGTAGTAGGTCGACGGTGCGATCGGCAAGACTCGGCAGATCGGCTC 411 Query 34223 GACCCCGAAGGTGTCGCGATGCTGATCAATGAAGGCCTTCAGGACTTGAAAC-GGCGGTC 34281 || ||| | |||||||| || ||||| ||||||| | ||||| ||||||| Sbjct 410 AACGCCGTGGACCTCGCGATGGGCGTCGATGAACGCCTTCATCGC-CGAAACGGGCGGTC 352 Query 34282 GAGCTCCGCCTGAGCGAAAAACGCGCTCGCCAGTTTGAGAATCTCGTTGGTCCGGCGCAG 34341 |||||||||||| || ||||||||| |||| | |||||||||| | | || || Sbjct 351 GAGCTCCGCCTGCGCAAAAAACGCGGACGCCTTCCGCAAGATCTCGTTGGCCTGCCGGAG 292 Query 34342 TTCCTTGACCTCGCGCTCCAAGGCTTTGATGCGTTCACGCTCGGCCGTACTCACGCCATC 34401 || || ||||||||||| ||||| || || |||| ||| || || Sbjct 291 CTCGCGAACTTCGCGCTCCAACTGCTTGATCCGCTCGGTCTCGCTCGTTGTCGGCCCGGG 232 Query 34402 GCGCTCTCCACGGTCGACCTCGTTGCGCTTAAC----CCAATCCAACAGCGTCTGCGGCG 34457 ||| | | ||| | |||| | || | || ||| | |||||||| | | Sbjct 231 GCGAACAC--CGG--CATCTCGCTCGGCCTGACGCAGCCACTGTCGCAGCGTCTCGGCCT 176 Query 34458 TGCAGCCGATCATCGGCGCAATCGATTCGACGGCCGCCCACATCGACGGGTGCTCGCTAC 34517 ||||||| ||| || ||| | ||| |||| ||||||||| |||||||| ||| | Sbjct 175 TGCAGCCAATCTTCCCCGCTACCGACTCGATCGCCGCCCACTGCGACGGGTACTCATCCC 116 Query 34518 GCTGCTCGCGTACCAGGCGCACTGCGCGCTCTCGGACTTCCGGGGAAAACTGCTTGGCTT 34577 | ||||| | |||| || || || || ||||| || ||||| | | || | | Sbjct 115 GATGCTCCAGCACCATCCGGACCGCCCGATCTCGCACCTCCGGTGCGTAACGCGTCAACT 56 Query 34578 CTGTTCATGGCTCCATTCTCTC-AGAGTTGGAGCCTCC-ACAAACTCGGGGCGGTT 34631 ||||||||||| ||| ||||| || ||| ||||||| | ||| |||||||||| Sbjct 55 -TGTTCATGGCTTCATCCTCTCAAGGTTTGAAGCCTCCGAGAAAGACGGGGCGGTT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170635518860000